Gene detail

Gene detail information of Glyur000256s00016256

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27150.1	3.00E-57	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003525748.1	1.39E-122	PREDICTED: F-box/kelch-repeat protein At3g27150-like [Glycine max]
Swissprot	tr\|Q9LI89\|FBK70_ARATH	2.00E-66	F-box/kelch-repeat protein At3g27150
trEMBL	tr\|K7KP07\|K7KP07_SOYBN	5.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G14690.2}

Sequence

Transcript Sequence

>Glyur000256s00016256.1
ATGTCTACTAGTAAAAGAGCATTGCCTAGGTGGAGTTTTGGTTGTGGAAATTGCAGGAGNTCCCATAACAATTCATTGGCTGAAAACATGAGAATCCTAGGATTTTCACCCTCTGATAATGGTGATGGTGATTGCAATGGTTCCTCCTCAGGTCAAGAACCTCAGGATGCAGATTATGGTGTTGTTGTTCCNAGTCTCAGTGATGAGTTAGAGGCCATGATATTGGCCAGGTTCCCAATCTCAAAACACTGGAAGATGTGTTGCCTGAACAAGAAGTTCCTGACCCTACTCAAGACTGGTGAAATCTACAAGATCAGGAGAGTGATAGGGTTCAAGGAACCATCTGTGTTCATGTTAGCAACCTCTATTGGTACCTTGGCCTATGTTGCTGGTGGACTTGAGACAACAACTTGTAGGGAAGTGTTGAGTTCAGCTGAGAGGTACAACTCAGTAAACCACACTTGGGAACCACTCCCAAGGATGATTAAAAAGAGGAGGTTTTGTTCAGGTTGTTACCTTGACAACAAGTTCTATGTGATTGGTGGAGTTGATGAGCAACCGAATGACCTCACTTGTGGTGAGTTCTATGATGAGGTCACAAACACTTGGAACTTGATCCCTCACATGTTGAGGGACATTGTTAACCCTCTCTCAAGTTCAAGATCACCACCTCTTATTGCAGTTGCCAACAATGAGCTTTACACACTTGATGCTTCCTCAAATGAGTTGAAGGTTTATATGAAAGGAAGCAACACATGGAAGAAGCTTGGGAATGTTCCTGTGAGAGCTGATGCNCAAGGTGGTTGGGGTATTGCTTTCAAGTCCTTGGGGAATGAGTTGCTTGTGATTGGTGCTACCTCAGCATCCTATTCACAGAGAGCATTGATGACTATTTACACTTGTTGCCCTCATCCATGTGTTGAGGAGTTGAATTGGAGGCAANTTNTGTGCNGCAGTGGCAACCTNAATCCCTTCATTCACAATTGTGCTNTTATGTTAGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00256	106325	107743	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000256s00016256.1	PF01344.20	Kelch_1	122	161	1.50E-05
Glyur000256s00016256.1	PF01344.20	Kelch_1	165	209	3.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.244
SRR1783600	control	0.284
SRR1783602	moderate drought stress	0.046
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.186
DRR006522	Root Winter glycyrrhizin high producing strain	0.108
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.001
SRR2868004	Drought Stress (root)	12.931
SRR2967015	Control (root)	10.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.288
SRR9715740	Leaf	0.665
SRR9715741	Leaf	0.923
SRR9715739	Root	1.560
SRR9715742	Root	1.184
SRR9715743	Root	1.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.321
SRR8749029	MeJA induced 9h	0.030
SRR8749030	Uninduced	0.713
SRR8749031	Uninduced	0.195
SRR8749032	Uninduced	0.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.821
SRR8400027	Control - Root	6.161