Gene detail information of Glyur000256s00016254.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14170.1 | 0 | SWIB/MDM2 domain superfamily protein |
| NR | XP_004489606.1 | 0 | PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FMT4|SNF12_ARATH | 0 | SWI/SNF complex component SNF12 homolog |
| trEMBL | tr|I1N798|I1N798_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G18360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00256 | 101236 | 104543 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000256s00016254.1 | PF02201.13 | SWIB | 332 | 405 | 2.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.045 |
| SRR1783600 | control | 24.252 |
| SRR1783602 | moderate drought stress | 23.294 |
| SRR1811619 | moderate drought stress | 22.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.441 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.445 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.223 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.596 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.025 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.024 |
| SRR2868004 | Drought Stress (root) | 29.742 |
| SRR2967015 | Control (root) | 30.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.000 |
| SRR9715740 | Leaf | 33.885 |
| SRR9715741 | Leaf | 29.184 |
| SRR9715739 | Root | 13.138 |
| SRR9715742 | Root | 29.028 |
| SRR9715743 | Root | 25.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.710 |
| SRR8749028 | MeJA induced 9h | 17.018 |
| SRR8749029 | MeJA induced 9h | 6.792 |
| SRR8749030 | Uninduced | 7.059 |
| SRR8749031 | Uninduced | 5.167 |
| SRR8749032 | Uninduced | 5.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.609 |
| SRR8400027 | Control - Root | 19.433 |