Gene detail

Gene detail information of Glyur000256s00016253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27120.1	6.00E-156	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KHN15424.1	0	Fidgetin-like protein 1 [Glycine soja]
COG	YP_183570.1	4.00E-41	cell division protein CDC48 [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	3.00E-57	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|K7KP02\|K7KP02_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G14440.2}

Sequence

Transcript Sequence

>Glyur000256s00016253.1
GTTTCTGCCCGCGGGAGAAAGAGGATAGACAAATGGCGGGAGAGGGGGGAGGATGCAAAATGAAATAAGAAAAGGGAATCTATCTATCTCAGTGAAACATAACACTACTACAGTTCCGAATTCTTGTGCCGTTTGTGAATTGTTTGGTGAGAGAGAGTGAAAATGGAGGAAGCAGCAACGAAGAAGAAGAAGAAGGAGGAGAAGAGTTGGAGAAAGGAAGTGGAGGAGAAGGTGAAGCGGGTACAGTCTCTGTTGTTCGGCGCCGAGCGTGCACTTGAAACCCATGACTCCTCTTCCGCCTACCTCCTCTCCCTTCGCCTCCTCGGATTCCTCGACTCCCATTCCCACGAAGAAGAAAAAGAAGAAGAAGAAGCATTCCTCCAACCCATTCGCCGTGAAGCTCTCTCTCTCCTTCACTCCGCTCGTCGATCTCTCTCTTCTCTCTCTGATCGCCAAGCTTTTGAGGGAGCAAAGAGGTCCCCAGGACCCCTTTTTGGCACAACAGGAGATATTGACATTGGGAAGATTCGGAATTCAAAGTACTTTCGAGCTCTTCTNAAGCAATCTAAGGAAAAAGATATCNCTAAATTGGTTGATCAACTAGGGAAGCAAGACAAAATAGGTAGTGAAGCATCGAAGGATTTGGTGCAAGCGAAGTTAACATCCATGTATGGGAAAAGCAACTTGAGGACTAGTAATGGTTCAAAGAGTTTTTTCAACATGAAAAATAACAGCTCTGAGGACTGCATGATTGTTGAAAGGGCTCAATCACATGCCAGCCTTACAAAGGGTCCTGGTGTCTCTTCTTTTTTTGAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACAATTTTTCGACAAAGCGTGCACACATGGAAAATAATAGCCCNAGAGTTGGTTATATGAAGTCACCTTCAAGCAAGGAGGAAGTTAATCCCGATGTTTGTGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGAAGCAAAGAAAAAACGAGGAGCAGTTGGTTCACACAGTCCATCTGTCTCACCACAGTGCGACAACAATCCTGCCAACAGGTCATATGGTGGGAGATCNTATGGTGTTTCACGACGTGGCTTCCGTGGCAATTTTGTTCCCCCTATTAAATCCAATGGGAGTAATACTGGAAATACAAGTTCACGAATTGCTGGAAAGTGTGATGATTCTTTAGATGACTCTACAAAGAGATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAACTGAGGAATTTAGAACCTCGTCTCATTGAACATGTTAGTAATGAGATTATGGATAAAGATCCCAATGTTCGCTGGGATGATATTGGTAATATAAATAGCTGTTCATCTTTCTGCTTTGTTCACCAAATTGATGGTTCATATGAAAATAAATACACTTACACAATATTTAATGACATTNTAGCTGGATTAGAGCACGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAGGGCTGCCGTTCTCCAGGGAAGGGTCTGCTTCTTTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAATGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCACTTTTTGGAGTGGCCAGTTGTCGTCAGCCNGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAGTCAGATGGGGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGCTTTGACAGTGGTAACGAGCAGATTCTGCTTATAGAGGCAAGAGCTTGGATTATACGTAACCTTTTAGAGAAGGATGGATTATTCAAGCTATCAAATGAGGAAATTGATACTATATGCAACTTAACGGAAGGTTATTCTGGATCAGACATGAAAAACTTGGTGAAGGATGCTTCTATGGGNCCCCTGAGAGAGGCTTTAAGACAAGGCATAGAAATTACAAACTTGAAAAAGGAGGATATGCGGCCAGACTTCGAGAATGCTTTGCATGAGGTGAGGCCTTCTGTTTCCCCAAATGANCTTGGCACTTATGATCAATGGAACAAGCAATTTGGAAGCCTATCACTTTAGAGGAATGTGTTATTATTGTCTGTGAGACAAAAGCATATCAACAACGAGTCACATAGATGGTAGCAATGCAATAGCAATATCGACCTTATAGAGATTTTACCTTAGTACCTGAACTGCATAGGCAGTCAGAATCAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00256	93118	99423	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000256s00016253.1	PF00004.24	AAA	460	565	2.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.271
SRR1783600	control	1.159
SRR1783602	moderate drought stress	2.648
SRR1811619	moderate drought stress	2.754

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.130
DRR006520	Root Summer glycyrrhizin high producing strain	2.110
DRR006521	Root Winter glycyrrhizin high producing strain	1.754
DRR006522	Root Winter glycyrrhizin high producing strain	1.816
DRR006523	Root Summer glycyrrhizin low producing strain	0.621
DRR006524	Root Summer glycyrrhizin low producing strain	0.579
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.068

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.546
SRR2868004	Drought Stress (root)	1.487
SRR2967015	Control (root)	1.556

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.449
SRR9715740	Leaf	0.656
SRR9715741	Leaf	0.944
SRR9715739	Root	0.150
SRR9715742	Root	0.838
SRR9715743	Root	0.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.890
SRR8749028	MeJA induced 9h	2.969
SRR8749029	MeJA induced 9h	1.994
SRR8749030	Uninduced	0.286
SRR8749031	Uninduced	0.095
SRR8749032	Uninduced	0.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.010
SRR8400027	Control - Root	5.525