Gene detail information of Glyur000256s00016240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59180.1 | 3.00E-49 | DNA-directed RNA polymerase II |
| NR | XP_007016300.1 | 3.66E-64 | DNA-directed RNA polymerase II isoform 4 [Theobroma cacao] |
| Swissprot | tr|P46279|RPB7_SOYBN | 2.00E-66 | DNA-directed RNA polymerase II subunit RPB7 |
| trEMBL | tr|I1K337|I1K337_SOYBN | 4.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00256 | 31308 | 32949 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000256s00016240.1 | PF03876.12 | SHS2_Rpb7-N | 11 | 49 | 2.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.527 |
| SRR1783600 | control | 3.479 |
| SRR1783602 | moderate drought stress | 1.711 |
| SRR1811619 | moderate drought stress | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.437 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.898 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.783 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.602 |
| SRR2868004 | Drought Stress (root) | 26.733 |
| SRR2967015 | Control (root) | 27.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.766 |
| SRR9715740 | Leaf | 2.103 |
| SRR9715741 | Leaf | 3.377 |
| SRR9715739 | Root | 1.719 |
| SRR9715742 | Root | 3.211 |
| SRR9715743 | Root | 1.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.245 |
| SRR8749028 | MeJA induced 9h | 1.165 |
| SRR8749029 | MeJA induced 9h | 0.962 |
| SRR8749030 | Uninduced | 1.560 |
| SRR8749031 | Uninduced | 1.025 |
| SRR8749032 | Uninduced | 0.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.022 |
| SRR8400027 | Control - Root | 9.804 |