Gene detail information of Glyur000255s00016829 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26310.1 | 4.00E-89 | Chalcone-flavanone isomerase family protein |
| NR | XP_004498865.1 | 0 | PREDICTED: uncharacterized protein LOC101497410 [Cicer arietinum] |
| Swissprot | tr|Q84RK2|FAP2_ARATH | 2.00E-112 | Fatty-acid-binding protein 2 |
| trEMBL | tr|G7I9U4|G7I9U4_MEDTR | 0 | Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00255 | 146236 | 150180 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000255s00016829.1 | PF02431.10 | Chalcone | 213 | 396 | 3.70E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.846 |
| SRR1783600 | control | 1.891 |
| SRR1783602 | moderate drought stress | 1.043 |
| SRR1811619 | moderate drought stress | 1.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.761 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.673 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.435 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.659 |
| SRR2868004 | Drought Stress (root) | 16.001 |
| SRR2967015 | Control (root) | 14.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.081 |
| SRR9715740 | Leaf | 8.107 |
| SRR9715741 | Leaf | 27.681 |
| SRR9715739 | Root | 10.666 |
| SRR9715742 | Root | 18.411 |
| SRR9715743 | Root | 16.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.025 |
| SRR8749028 | MeJA induced 9h | 2.707 |
| SRR8749029 | MeJA induced 9h | 3.229 |
| SRR8749030 | Uninduced | 9.639 |
| SRR8749031 | Uninduced | 11.476 |
| SRR8749032 | Uninduced | 12.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.630 |
| SRR8400027 | Control - Root | 12.454 |