Gene detail

Gene detail information of Glyur000255s00016826

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03720.2	0	cationic amino acid transporter 4
NR	XP_004493214.1	0	PREDICTED: cationic amino acid transporter 4, vacuolar-like [Cicer arietinum]
COG	YP_002018464.1	3.00E-89	amino acid permease-associated protein [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|Q8W4K3\|CAAT4_ARATH	0	Cationic amino acid transporter 4, vacuolar
trEMBL	tr\|Q2HVB3\|Q2HVB3_MEDTR	0	Cationic amino acid transporter 2, vacuolar protein {ECO:0000313\|EMBL:AES80917.1}

Sequence

Transcript Sequence

>Glyur000255s00016826.1
ATAAATACTAGATAGATTTGCCAGCACAGGATTTCATTCATATATATCAGAGAATATTTTGCACCGTTGCAGTGTGCGCAAAAGCTGCTGACTCATCGCGCCCCAAGCTTCACCCTTTCTCTCTGCAANCCCAAAACGAAGAAAAAGGGTGATAGTGGGTTGTTACTTCTGGGTTCAAATTTTTGTGGGGTTCATCAAAGTTCTCTCCTTTCTGCAAAACAAAATTGACCCAGAAAGTAGCCAGCATCATCATCACCACCCAACACTTGGTAATACTTGTGTTGGTTTTGGATAATGATTTTGAAGGGTGAGGATGAGGGTGTTGGTGTTGGAGGAGGAGGAGGAGGAGGAAGATGGTTAAGGGGATTTGGAAGCTTGATTAGGAGGAAGCAAGTTGATTCTGTTCATTTCAGGGGGCATGCTCAATTGGCTCGCAAGTTATCTGCTGTTGATCTTGTTGGAATTGGGGTTGGAGCTACTATAGGAGCTGGAGTGTATATTCTCATTGGAACAGTTGCTAGAGAGCAGGCGGGACCAGCACTTGTAATATCACTCTTCATTGCAGGAGTAGCTGCTGCACTATCAGCTTTGTGTTATGCAGAACTTGCATGTCGATGCCCGTCTGCAGGGAGTGCTTATCATTATACATACATATGCATTGGAGAAGGGGTTGCTTGGTTGGTTGGTTGGTCCCTGATTCTAGAATATACAATTGGTGCTTCAGCTGTTGCTCGTGGCATAACCCCAAATCTGGCCCTGTTTTTTGGTGGAGAGGACAACCTGCCTTTATTTCTGGCTCGTCATACCTTACCAGGTCTTGGAATTGTGGTTGATCCATGTGCAGCTGTATTAATTCTTCTTGTTACCCTCCTCTTGTGCCTTGGAATCAAGGAGAGTTCAACAGCACAATCCATTGTGACAACGGTAAATGTATGTGTCATGCTATTCATCATTATAGTTGGTGGGTATCTAGGTTTCAAGTCCGGATGGGTTGGATATGAACTCCCCAGCGGGTATTTTCCATATGGAGTGAATGGGATGTTTGCTGGGTCTGCAATAGTTTTCTTCTCATACATTGGTTTCGATTCAGTGACCAGCACTGCTGAGGAGGTCAAAAACCCTCAACGAGATTTGCCAATTGGCATATCAACTGCATTAGCTATATGCTGCATTCTGTATATGCTTGTATCTGCAGTTATTGTTGGTTTAGTGCCATATTATAAGTTGGACCCTGATACCCCAATCTCCTCAGCATTTTCTAGCTATGGGATGGAATGGGCAGTGTATATAATAACAACTGGAGCTGTCACTGCTCTTTTTGCCAGTTTGTTGGGTTCAGTTCTTCCTCAGCCACGAGTATTTATGGCAATGGCTAGGGATGGTTTGTTGCCCTCTTTCTTCTCGGATATCCATAGGGGCACACAGATTCCTTTGAAAAGCACTATTGTTACTGGCATCTTTGCAGCTGTTCTTGCATTCTTTATGGATGTTTCCCAGTTAGCAGGAATGGTTAGCGTGGGAACATTGCTCGCATTTACCACCGTTGCAGTTTCAGTTTTAATAATCAGATATGTTCCACCTGATGAGGTGCCCATTCCATCTTCACTTCTAGCATCTGTTGATCCATTAGTGATGCATTCTGGTGGTGATGTTGAGGAAGACGGGACCATAAGTCCCGTAGATCTTACTAGTTATTGTGAGAATGATCACATACATCACAAGTCAGAGGTTCTGCTTGGACATCCTTTAATCTTAAAACAAGTAACCAAAGAGGAGCGGAATGAGAAGACTAGGAGAAAACTTGCTGCTTGGACCATAGCCCTTCTATGTGTAGGGATTCTCATAGTTACCGGTGCAGCTTCAGCCGAAAGGTGTCCCGGGATTTTGCGCTTAACACTGTGTGGAGTGGGAGTAATTCTTCTTTTGTGCAGTATAATTGTGCTGGCCTGCATAAAGCAAGATGATACTAGGCACAGCTTTGGACACTCAGGAGGTTTTGCTTGCCCATTTGTTCCATTCTTACCTGCTGCCTGCATTCTTATAAACACCTACTTACTAATTGATCTTGGAGCTGCTACATGGTTACGAGTTTCTGTATGGATGTTAATAGGAGTACTTATATACTTGTGCTACGGTCGCACCCATAGCTCATTGTTAAATGCAACCTATGTTCCCTCGGCACGTGCTGATGAGATCCATCGTACTCAAGCAACTCATCTAGCATAGTATATTTACACAGCAGGCACCACAGTTACCTCACTGCAGGTCCCTGTCCATTTGTTGGGGAGTTGTCACCTTACATATCTTATACCCATTTGTAAATAAATCTCTTATTCAAATTAAGGACACATTTGGATAAACAATTTAATTAAGTATTTGTTCTAAAGAATTTATTGTTCACGAGCAATATTGGGGACGAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00255	137580	145059	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000255s00016826.1	PF13520.1	AA_permease_2	50	433	2.90E-55
Glyur000255s00016826.1	PF13906.1	AA_permease_C	568	618	2.70E-23
Glyur000255s00016826.2	PF13520.1	AA_permease_2	50	204	3.10E-15
Glyur000255s00016826.2	PF13520.1	AA_permease_2	210	401	4.90E-31
Glyur000255s00016826.2	PF13906.1	AA_permease_C	536	586	2.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.301
SRR1783600	control	12.586
SRR1783602	moderate drought stress	25.048
SRR1811619	moderate drought stress	24.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.406
DRR006520	Root Summer glycyrrhizin high producing strain	19.066
DRR006521	Root Winter glycyrrhizin high producing strain	24.262
DRR006522	Root Winter glycyrrhizin high producing strain	23.910
DRR006523	Root Summer glycyrrhizin low producing strain	23.151
DRR006524	Root Summer glycyrrhizin low producing strain	22.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.648

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.715
SRR2868004	Drought Stress (root)	52.622
SRR2967015	Control (root)	93.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.844
SRR9715740	Leaf	21.107
SRR9715741	Leaf	22.215
SRR9715739	Root	17.406
SRR9715742	Root	19.066
SRR9715743	Root	18.293

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.032
SRR8749028	MeJA induced 9h	47.146
SRR8749029	MeJA induced 9h	39.280
SRR8749030	Uninduced	36.842
SRR8749031	Uninduced	105.095
SRR8749032	Uninduced	181.350

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.537
SRR8400027	Control - Root	36.026