Gene detail

Gene detail information of Glyur000255s00016820

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28760.1	1.00E-80	Uncharacterized conserved protein (DUF2215)
NR	XP_004493211.1	0	PREDICTED: uncharacterized protein LOC101495418 [Cicer arietinum]
trEMBL	tr\|Q2HVB6\|Q2HVB6_MEDTR	0	Transmembrane protein, putative {ECO:0000313\|EMBL:AES80912.1}

Sequence

Transcript Sequence

>Glyur000255s00016820.1
GTTGTGTGTTTGTTTCCTAGTGAATAATTGGCATCTGTATGTCATACTGGATTGTTNGCTCAGTTTTCCAAAATGTGTGCTCAGTATGTTATTTATTTTGTTCTTGCAAGTTCTGTTCCTCCCTTTTTGCATTTGAAAATGATCTCAGCACATTACAACTGCAGGTGTTGATACTGAAAGGCCAGTTTTGGATGTCTCCCCTTCCCCACTTTCTGGGCATTCAGATACTCACGGTGTTAAAAACATCTTACGATGTGAGCGTGTTCAAGCTTCTGGTATTTCGAGATTGAAACTTGGGAGCTATGCTAATTCATTTCATATTACTTTGGCTCCATCTGTGGTAATCCCAGAGAGGTTACATAACAAAATTCAGGTTTGTTTCCANAGGAATAATACTCTTGGATGGTGTCAATGTGAAAAGGATGAATGGAGGAGTTTACAGAAGGGGATCTGGAGTGCTGTTATGTCACCTTATGAAACTAGATATGTCGATGTGAGGATTGATGGTGAAATATCGGGTTCAGTTACAGTTGCTCTTGAAGAAGGTTTTCAGCAATGGCGCCTCATTTGTCTTGCAGTGGGATTGATACTGCTGCTGTTGGCTCCAATAATTTGCAGTTGGGTTCCNTTTTATTATAGCAGTTCAATGGCTATAGGGGTCTTTCTTGTCATTATAATCCTTCTTTTTCAGGGCATGAAATTATTGCCAACTGGAAGAAAAAATATATTTTACCTTACCATATATGGATCAGTGCTTGGAGCCGGGTCATTCCTTTTGCACCAATTCTCCATGATCATAAATTCAATTCTTCAGAGTTTTGGGATGAGTGAAGAGATGCATAATCCAGTTGCTGTTTTTGTACTACTGGGTATCATCTTGGCTGGAGCTGCTTTAGGATACTGGATTGTTAGGAGGTTTGTTATTTCAAAAGAAGATGGTAGTGTGGATGCTGGGGTCGCCCAGTTTGTGAAATGGGCAATGCGCATTATTGGAACATCCTTCATTTTGCAGAGCACTCTTGATACTCCTCTAGCAATTGGAGCCTTGATCTCTTGNGGAGCTGTTTGCAAACTTATTTCTTCCATAAAATTGCTCTATGGATGGTATGAAACTTCAGGGAATGATGACTATTCACTGCAGTGGGTGACAGGAACACGTGGTCGTGCTGAATTCCTTAGGAAGTCAACTCCTAAAAGAAAAATGTTGAATGGCCCTAATGGAAAAATGTGGAACAGCCCAAAAAGGTCGGCTTGGTCTGACTCTCCTGTGAGAGGTGTTGTATCACCATCTTCTGGGGTATCACCACAATCTTCTGGGACTCAATTAGGGCGGGATTATTATTCAACCTTCCACAAGACCGGCAACAGAAAGAAGTTCACAAAGGAAGAGTGGGATGATTTCACAAGAGAGTCTACTAAGCAAGCCCTGGCAGAATGGGCAGCATCTCCAGAATTCACTGATTGGATCATCGATCATGCAGACCGGATACAACTCCTTCCAAGTGAGAGTTCAGACGAGACAATGGGGAGCGAATCGGATTCCACGGAGGTTGGAAGTGGAAATGGATTTCGGCTTTTTAATTGGCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00255	104561	109568	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000255s00016820.1	PF10225.4	DUF2215	21	301	7.90E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.690
SRR1783600	control	1.620
SRR1783602	moderate drought stress	1.913
SRR1811619	moderate drought stress	2.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.488
DRR006520	Root Summer glycyrrhizin high producing strain	6.044
DRR006521	Root Winter glycyrrhizin high producing strain	8.569
DRR006522	Root Winter glycyrrhizin high producing strain	7.918
DRR006523	Root Summer glycyrrhizin low producing strain	13.828
DRR006524	Root Summer glycyrrhizin low producing strain	13.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.741
SRR2868004	Drought Stress (root)	10.683
SRR2967015	Control (root)	9.817

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.959
SRR9715740	Leaf	19.217
SRR9715741	Leaf	19.243
SRR9715739	Root	9.889
SRR9715742	Root	23.554
SRR9715743	Root	19.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.952
SRR8749028	MeJA induced 9h	69.873
SRR8749029	MeJA induced 9h	126.058
SRR8749030	Uninduced	94.795
SRR8749031	Uninduced	69.723
SRR8749032	Uninduced	93.372

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.392
SRR8400027	Control - Root	10.087