Gene detail information of Glyur000255s00016819 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35220.1 | 0 | Peptidase M50 family protein |
| NR | XP_004493210.1 | 0 | PREDICTED: uncharacterized protein LOC101495088 [Cicer arietinum] |
| COG | YP_007097171.1 | 9.00E-69 | putative membrane-associated Zn-dependent protease [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q949Y5|EGY1_ARATH | 0 | Probable zinc metalloprotease EGY1, chloroplastic (Precursor) |
| trEMBL | tr|I1N8C6|I1N8C6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00255 | 95014 | 101139 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000255s00016819.1 | PF02163.17 | Peptidase_M50 | 311 | 465 | 6.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.987 |
| SRR1783600 | control | 9.131 |
| SRR1783602 | moderate drought stress | 6.496 |
| SRR1811619 | moderate drought stress | 6.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.987 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.538 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.372 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.580 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.748 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 80.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.451 |
| SRR2868004 | Drought Stress (root) | 8.583 |
| SRR2967015 | Control (root) | 11.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.741 |
| SRR9715740 | Leaf | 69.750 |
| SRR9715741 | Leaf | 31.172 |
| SRR9715739 | Root | 4.375 |
| SRR9715742 | Root | 7.989 |
| SRR9715743 | Root | 8.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.478 |
| SRR8749028 | MeJA induced 9h | 6.509 |
| SRR8749029 | MeJA induced 9h | 5.407 |
| SRR8749030 | Uninduced | 8.392 |
| SRR8749031 | Uninduced | 5.585 |
| SRR8749032 | Uninduced | 5.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.884 |
| SRR8400027 | Control - Root | 15.217 |