Gene detail

Gene detail information of Glyur000255s00016807

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13530.1	7.00E-22	protein kinases;ubiquitin-protein ligases
NR	XP_008245689.1	0	PREDICTED: ankyrin repeat and protein kinase domain-containing protein 1-like [Prunus mume]
COG	YP_001957498.1	6.00E-40	hypothetical protein Aasi_0340 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P0C550\|AKT1_ORYSI	7.00E-15	Potassium channel AKT1
trEMBL	tr\|D3J162\|D3J162_MEDTR	0	Vapyrin {ECO:0000313\|EMBL:ADC33495.1}

Sequence

Transcript Sequence

>Glyur000255s00016807.1
ATGGACAGGCTCATAAGATTAGACCCATCAAACATCGTCCCAATAAGGATCGAACCAGGTCAANAATGCCACGGCGAAATCACGCTACGCAATGTCATGCACACCATGCCAGTGGCCTTCAGCCTCCAACCACTCATCAAAACCCGTTACACCATAAAGCCCCATTCAGCAATCATACCCCCATTGTCAACACTTACAGTAGAGATTCTCTACCATCTCCCACACGGCTCAACCACTAGTACTATTCTCCCNCACTCATTCCCCTTCTCCGACGACTCCTTCCTCCTCCACAGCGTCGTCGTCCCCGGCGCCGCCGCCACCAAAAAACACCACCACCCTCCCTCCGAATCCGCCGTCCCCAACGACTGGTTCACNGCAAAAAAGAAACAAGTCTTCATCGATACCGCCATCAAAATCATCTTCATAGGCTCACCCATCTTAACCCAACTAATTTCACACGGTGGTTCAGTGGATGAAATAAGACACGTGTTGGAATTCAGCGACCCGAAATGGAAAGCCGTTGATTCTAAAGATGCAATGGGAAACACGCTGCTCCACTTGGCCATTTCACAGCGCAGACCAGACCTCGTTCAGTTACTCCTTGAATTCGAACCAAACATAGAAGCAACAAATAATAACCGTTACGGCTCAACAACCACCCCGCTAGAAGCGGCGTGTTTTTCGGGGGAAGCGTTGATAGTTGAGCTTCTGTTAGCTCGTAACGCCAACACGGAGCGAACCGAAGGATCCGAGTGGGGCCCAATTCATCTCGCGGCGAGAGAAGGACACGTGGAGGTTTTGCGTCTTCTGTTGAAAAATATTAACGCTTTGGATAAAGACGGGAACACGGCGTTNCACCTCGCNGTTGAGGAGCGAAGGAGAGACTGCGTGAAGCTACTGTTGGCTAACGGCGCGAGGACGGACATCCGTAACGGGAGAGATGGGGATACGGTTTTACACGTGGCGGCGGTTACGGGGGAGGAAAGCGTGATCAAGTTGTTGCTGAGGAAGGGTGCGAACAAGGACGTGAGGAACGCGCTGGGGAAGACCGTGTATGATGTTGCGGNTGAGAACGGGCACGCAGCGCGTGTTTTGGACGCGCTTCGGTTTGGGGATGGTTTGTGCGTGGCGGCGAGGAAAGGGGAGGTGAGGGAGATTCGGAGGTTGTTGGAGTGTGGTGCGGTTATAAACGGAAGGGACCAGCACGGGTGGACGGCGTTGCATAGGGCGTGTTTCAAGGGAAGGGTTGAGGCGGTTAGGATTCTGTTGGAGAAAGGCGTCGACGTGGACGGTAGGGACCACGAGGGTTACACGNCGTTACACTGTGCCGTTGAGTCGGGTAACGGGGACGTGACGGAGGTGTTGGTGAAGAAAGGTGCGGATGTTGAGGCCANAACGGATAAGGGTGTTACGGCGTTGGAGATAGCGGAGTCGTTAAACTATGTNGGGATCACAAGGATTCTACTCGGTGCTGGGGCTAGTAGGGAGAGGATAGGAAGAACCGCAGAGGTTACTGTTAGGGGTTGCTTTGATCGTTCATTGGCTTTGGCTGTGCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00255	6477	8036	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000255s00016807.1	PF13606.1	Ank_3	181	207	5.70E-05
Glyur000255s00016807.1	PF12796.2	Ank_2	222	311	2.20E-18
Glyur000255s00016807.1	PF00023.25	Ank	314	345	3.40E-07
Glyur000255s00016807.1	PF12796.2	Ank_2	414	494	7.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.047
SRR1783602	moderate drought stress	0.083
SRR1811619	moderate drought stress	0.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.528
DRR006520	Root Summer glycyrrhizin high producing strain	0.551
DRR006521	Root Winter glycyrrhizin high producing strain	3.106
DRR006522	Root Winter glycyrrhizin high producing strain	3.171
DRR006523	Root Summer glycyrrhizin low producing strain	0.495
DRR006524	Root Summer glycyrrhizin low producing strain	0.562
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.465
SRR2868004	Drought Stress (root)	0.117
SRR2967015	Control (root)	0.422

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.285
SRR9715740	Leaf	0.535
SRR9715741	Leaf	0.020
SRR9715739	Root	1.240
SRR9715742	Root	0.269
SRR9715743	Root	0.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.644
SRR8749028	MeJA induced 9h	3.401
SRR8749029	MeJA induced 9h	2.647
SRR8749030	Uninduced	3.362
SRR8749031	Uninduced	2.854
SRR8749032	Uninduced	3.415

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.297
SRR8400027	Control - Root	0.832