Gene detail

Gene detail information of Glyur000254s00017620

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32560.1	2.00E-98	F-box family protein
NR	XP_007141515.1	2.15E-178	hypothetical protein PHAVU_008G202600g [Phaseolus vulgaris]
Swissprot	tr\|Q8RY82\|FB121_ARATH	6.00E-124	F-box protein At2g32560
trEMBL	tr\|G7KCV1\|G7KCV1_MEDTR	1.00E-180	F-box plant-like protein {ECO:0000313\|EMBL:AET00172.1}

Sequence

Transcript Sequence

>Glyur000254s00017620.1
ATGTCTCTTGTGAGGAAGACTCTTACCTCAAAAGTAGAGAATGTTGAAGAGGAGGAGTACTCACAGGAGTTGTCGGTGTTGGACTTGCCAGAGCTTGTGTTGGAGTGCATTCTTGAGAGGCTCCCTCCTGAATCACTATGTCAAATGGCTGGGGTTTGCCGTTCCTTGAGGGAGAGGTGTGTGAGTGATCACCTATGGGAGAGGCACATGAAGCAGAAATGGGGTAGAGTTATTGGTTCGGTTGCTTATAGGGAGTGGAAATGGCATGTTGCTTCCAAGAGGAATGTTGGTGGCAGCCTCAGACATGGCAAGCAAAGTACCTTGATGAGGCTTGTGTCCCTTCGTTGGCCTTTTTCATGGATGATGAGAATGAAGAATGGCCATGTTGGATTTATGCTATCATGCTATGATGCTGAGCTTAGCTATGATCCACACACTGACACTTTCCAAGCCAGGTATCCACCACATGGAAGAAGGGCAGTTGCAATAGAGCAGGGGATCCAATGGGAGAGGCTAAGAGCACCNCCTGTCGATACTACTCCNCATGATCTTCATATCTCTGACTGTCTGTATGATTTGCATCCGGCTGATCACATAGAGATTCAATGGAGGAGAAACAAAGAATTNCCTTATGGTTGGTGGTATGGTGTTGTAGGCCATTTGGATTCATGCAATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGACACAGTGGTGCTAGAGTTCAATCAGTACACTCCCGATTCGCGATGGAGGAGGACAACTATCAGGAGGAAAGATCACCGGGAGGAGGGAAACGAGGCTGACGGATTTTATGGGGGAATTAGAAAGATTAAGAGTGAGAAGGAGATTTCAGTTTGGAAAAGCCTTTGGCCTTCTGAAGTCTTGGACTAATCAATCAGATCATCAAATTTTCCACGTAGCATTATCTCAAGACTAGTATTCTTATTTAGCAGATTCTTCTGCATTAGAGAAAAAGGGGGTTATCGGATTCTCATTCAGCCAAATGAGCATTGAGTCTGATCCTATTTGCTTTTCCCCTTTTCATTATCATATTTTTTTTTCATGGAAAAGTTTAGGCTTGTTCATGTGATCCCAATCAATGTAAATTACTTACGCACTGATGGAGAAGAATATTCATTCCACAATATATAGAATGATTAGAATCTCTCTGATATTCTCATATTAGCAAGCTTTGAGATCAATCACATAGCAATACAGACATTATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00254	204089	207278	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000254s00017620.1	PF00646.28	F-box	26	69	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.291
SRR1783600	control	13.023
SRR1783602	moderate drought stress	10.797
SRR1811619	moderate drought stress	11.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.497
DRR006520	Root Summer glycyrrhizin high producing strain	13.489
DRR006521	Root Winter glycyrrhizin high producing strain	11.964
DRR006522	Root Winter glycyrrhizin high producing strain	11.390
DRR006523	Root Summer glycyrrhizin low producing strain	10.958
DRR006524	Root Summer glycyrrhizin low producing strain	11.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.916

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.929
SRR2868004	Drought Stress (root)	43.054
SRR2967015	Control (root)	40.448

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.009
SRR9715740	Leaf	67.769
SRR9715741	Leaf	59.075
SRR9715739	Root	7.315
SRR9715742	Root	16.161
SRR9715743	Root	12.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.506
SRR8749028	MeJA induced 9h	30.561
SRR8749029	MeJA induced 9h	20.561
SRR8749030	Uninduced	31.709
SRR8749031	Uninduced	32.661
SRR8749032	Uninduced	22.424

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.997
SRR8400027	Control - Root	23.304