Gene detail

Gene detail information of Glyur000254s00017617.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12200.1	0	pyrimidine 2
NR	XP_004491233.1	0	PREDICTED: dihydropyrimidinase-like isoform X1 [Cicer arietinum]
COG	YP_006373967.1	6.00E-165	dihydropyrimidinase [Tistrella mobilis KA081020-065]
Swissprot	tr\|B9FDB8\|ALN_ORYSJ	2.00E-17	Probable allantoinase
trEMBL	tr\|G7K315\|G7K315_MEDTR	0	Dihydropyrimidinase {ECO:0000313\|EMBL:AET00187.1}

Sequence

Transcript Sequence

>Glyur000254s00017617.2
GCGGAGGAAGAGAGGCTGAGGCAGTAGCACAAGAGATGGGTTTCACTTTCAGATCACAACAACTCTCTTCTTCTTCATCATCATTTCCTCTTCTCTCTTATCTTGCTTCTTCTTCCTCACATGCATCACTCCCTCTTCCCTATCCACAATCTAACCAGTTTTGTGAAGCTGGAATTGGATATGACGAGTCCTCGTGTGGAACTGGAATTCCATCATCATCCAAGTTGTTGATCAAAGGGGGAACTGTTGTGAATGCTCACCACCAACACCTTGCTGATGTTTATGTTGAGGATGGCGTCATTGTTGCCGTCAATCCGAATATCAGGGTTGGTGATGACGTGAAAGTGATAGATGCCACTGGGAAGTTTGTCATGCCAGGAGGCATTGATCCTCACACCCACCTAGAGTTTGGGTTTATGAATTTCGTAACAGCAGATGACTTCTTCAGTGGCCAGGCTGCAGCATTAGCTGGTGGGACAACAATGCATATTGATTTTGTTATACCAATNAATGGGAGTTTAATAGCTGGTTTTGAAGCCTATGAAAAGAAGGCAAGGAAGTCTTGTATGGATTATGGTTTCCATATGGCTATTACCAAATGGGACGAAACTGTTTCNAGAGAAATGGAGCTCATAGTCAAGGAGAAAGGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGGTCAATGATGAGCTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTCGGTGCCTTAGCAATGGTCCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAAAAGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATCCTCTTTCAAGGCCTCCAGTGTTGGAAGGAGAGGCAACTGCTCGTGCTATTCGCTTAGCAGATTTTGTAAACACGCCTTTGTATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAATTGCGAAGGCTCGGAAATCAGGACAAAGAGTAATTGGAGAGCCTGTTGTTTCTGGGTTAGCCCTTGATGACTCTTGGCTTTGGCATCCTGACTTTGGGACTGCAGCAAAGCAAGTGCCTTCACTTGTTTCATTGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCTCTTCAAGCTGCCCTTTCAACAGGAGTTTTGCAGTTGGTAGGAACCGATCATTGTGTCTTTAACTCCACCCAGAAGGCTTTTGGAATTGATGACTTCCGGAAAATTCCTAATGGTGTCAATGGTATTGAAGAAAGAATGCATGTGGTCTGGGATACCATGGTGGAATCTGGCCAAATATCTGCCACTGACTATGTCCGGCTGACAAGCGCTGAATGGAAAGGAGCTATTCTTCCNGGATCTGATGCAGATATTATAATCCTCAATCCAAATTCAAGCTTTGAGGTAACTGCAAAGTCACACCACTCCAGAGTCGACACAAACGTCTACGAGGGAAGGAGAGGAAAGGGGAAAATTGAAGTGACTATAGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGTTCCCGGTACTGGGAGATACATACAAATGCCACCTTTTAGTTATCTGTTTGATGGAGTGGACAAGAAGGATGCAAGTTATCTGAATTCCCTTCAAGCCCCTGTTAAGCGAGCGAAATCCACCATATAGTTTCTGGTAGCCTTGTTCTAGTAAAAATCGACATTATGGGTTGGTTGGGACAATAAAGTATGTAAATGCAGTTGTCTGTTCAAATAAAGAAAAATATATGTATAGTTCGTGTACCGTTAAGCATTATATATGTATATGTATACTATAACAGATGACAGATAACCGATATATTTTGTTAACCTTTTCCATTGTGTCAAACGCAATAAGATACTATACAATATGTACCATGGAAACTGCTGGTCAGGTTTCTGTTCAAAATTGTAGAAAGAGACCATAGCTTTAGTAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00254	167440	175156	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01464	DPYS, dht, hydA	EC:3.5.2.2	Pyrimidine metabolism	map00240
			Pyrimidine metabolism	map00240
			beta-Alanine metabolism	map00410
			beta-Alanine metabolism	map00410
			Pantothenate and CoA biosynthesis	map00770
			Pantothenate and CoA biosynthesis	map00770
			Drug metabolism - other enzymes	map00983
			Drug metabolism - other enzymes	map00983

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000254s00017617.2	PF13594.1	Amidohydro_5	82	149	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.659
SRR1783600	control	57.953
SRR1783602	moderate drought stress	60.417
SRR1811619	moderate drought stress	59.511

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.543
DRR006520	Root Summer glycyrrhizin high producing strain	38.326
DRR006521	Root Winter glycyrrhizin high producing strain	40.164
DRR006522	Root Winter glycyrrhizin high producing strain	39.161
DRR006523	Root Summer glycyrrhizin low producing strain	36.467
DRR006524	Root Summer glycyrrhizin low producing strain	36.664
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.160
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.429

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.998
SRR2868004	Drought Stress (root)	69.374
SRR2967015	Control (root)	51.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.028
SRR9715740	Leaf	51.160
SRR9715741	Leaf	57.913
SRR9715739	Root	27.913
SRR9715742	Root	47.690
SRR9715743	Root	44.702

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.963
SRR8749028	MeJA induced 9h	80.064
SRR8749029	MeJA induced 9h	44.168
SRR8749030	Uninduced	66.211
SRR8749031	Uninduced	48.298
SRR8749032	Uninduced	41.647

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.178
SRR8400027	Control - Root	54.602