Gene detail

Gene detail information of Glyur000254s00017609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12170.2	1.00E-66	CRT (chloroquine-resistance transporter)-like transporter 3
NR	AET00194.2	1.30E-152	CRT (chloroquine-resistance transporter)-like transporter, putative [Medicago truncatula]
trEMBL	tr\|G7K322\|G7K322_MEDTR	5.00E-153	CRT (Chloroquine-resistance transporter)-like transporter, putative {ECO:0000313\|EMBL:AET00194.2}

Sequence

Transcript Sequence

>Glyur000254s00017609.1
ATGGCCTCGTTTTGCCGGGGGTTATCCGGCGGCGCCGGCGCCACCCTATTGGTCGGCCATGTTCAGCTCCGGCGGGCGGCGGTTCCCGCCGGGATTTGTGGGGTACACTACAGGTGTTCACTTCGGCGGCCGAAGGTGCTGAGAATGCAGCTGGCGACGATGGGGGCCTCCGGCGACGGCGGCGTGCGGCGGAGGAGGAAGGAGATGGAGAAGGTGGGGCCCTGCTCCTACGCGGTGGAGGATAGGAAGGTGGGGAATGATGACGTGGCGGGGAGGACTGGGAATCGGGCGGTGGAGGTGGCGGTGGCGGCGGCGGCGACGGTGGTGATGGGTGTGGGGAACAGAGTTCTTTATAAGTTGGCTTTGGTTCCTTTGAAACAGTATCCTTTCTTCCTCGCTCAGCTTTCAACTTTCGGATATGTAATAGTGTACTATGGCATTATGTATATCCGGCACCGTGCGGGGATTGTGACTGATGAGATGTTAAGTGTGCCAAAGGCACCATTTATTGCTATTGGTCTGTTGGAGGCTCTTGCTGCTGCCACTGGAATGGCAGCTGGAGCAATTCTCTCTGGAGCATCAATTCCAATTTTGTCTCAGACTTTTCTAGTGTGGCAAATTCTCCTGTCAATAATTTTTATTGGGAGAAGATATAAAGTCAACCAACTACTTGGGTGCTTTCTTGTAACCATTGGTGTAATTGTTACTGTAGCAAGTGGAGCTGATGCTGGAAATTCATTAAAGGAAGGTGGTATATTTTGGAGTCTTTTGATGATAGTTTCATTTTTACTCCAAGCAGCAGATACTGTGCTGAAGGAGCTAATCTTTTTGGATGCATCCCAAAAACTGAAGGTCTGCTCAAGTGATTACCGAATTGTTTTAATTCATACATTTCTACAAATTATGGCTTTCAAAAGTATGGTATTGGGCTTACCAGTTCTGCTACACTCACAAGCACATTTGCCTCAAACTTTGGTGCAAAGAACAGTAATTACTAATGTAGTAAAACGATGTGATGGTGCGCCTCTATTGCCATTGCTGTTTATTATTGTAAACATTGGTTTCAATATTGCGTTGCTTCATCTCCTCAAGATCTCTTCAGCTGTTTACCAATATCTATCTATGTGTTCACAATGCCATTGCCATACCTTGGTGTTGCCTCCTCTCTTCCCACAGGCTTTGTGGCAGGGGCCATCATTCTCCTTACTGGCTTACTCATTTATGCTTGGACCCCTTCAAATAATGGCTCCTCAAGTGCTTCCTTCTCAGAGGCTTGAGTTGAAACAAATGTGTTGACACTTCNTTGGAGACTCCAACACTAGCTACAAGGAGGAGAAAGGAAAATGTTGTTGTATATAATATAATTTGTTGACTCAATAAATTGCTAGTAGGCATTCTTGATGAGCTTAAGCTCAAGAGATTAGAAAGAGTAGAGGGATAGAAGAAAAGGTCTCTTAAGTCCAATTTTTGTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00254	129318	133525	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000254s00017609.1	PF13536.1	EmrE	141	242	3.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.110
SRR1783600	control	1.711
SRR1783602	moderate drought stress	1.746
SRR1811619	moderate drought stress	1.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.471
DRR006520	Root Summer glycyrrhizin high producing strain	1.208
DRR006521	Root Winter glycyrrhizin high producing strain	3.081
DRR006522	Root Winter glycyrrhizin high producing strain	2.422
DRR006523	Root Summer glycyrrhizin low producing strain	0.576
DRR006524	Root Summer glycyrrhizin low producing strain	0.625
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.854

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.327
SRR2868004	Drought Stress (root)	4.196
SRR2967015	Control (root)	3.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.992
SRR9715740	Leaf	7.978
SRR9715741	Leaf	9.463
SRR9715739	Root	3.273
SRR9715742	Root	5.722
SRR9715743	Root	5.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.361
SRR8749028	MeJA induced 9h	10.576
SRR8749029	MeJA induced 9h	9.039
SRR8749030	Uninduced	35.444
SRR8749031	Uninduced	14.373
SRR8749032	Uninduced	11.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.587
SRR8400027	Control - Root	6.275