Gene detail

Gene detail information of Glyur000254s00017604

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27220.1	2.00E-57	NB-ARC domain-containing disease resistance protein
NR	AGT75405.1	0	CC-NBS-LRR disease resistance protein [Cicer arietinum]
COG	YP_002463148.1	6.00E-07	NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|O81825\|DRL28_ARATH	1.00E-60	Probable disease resistance protein At4g27220
trEMBL	tr\|A0A067XTH1\|A0A067XTH1_CICAR	0	CC-NBS-LRR disease resistance protein {ECO:0000313\|EMBL:AGT75405.1}

Sequence

Transcript Sequence

>Glyur000254s00017604.1
ATGATTCTGTTCTCAGGTGCCTGGCCTCCCTATTATAAAATGGCAGACATAGCTATTTCCATTGCTGCTAAAGTCATGGAATATTTGTTTAAACCAACAATACAGCAAGGAAAATACTTGTTTGGTGTTGGAAAAATCATCAGAGATCTTGATGGTAAAAAGAAAGAGATGNCATTAACAAGAGACAGTGTGCAGAATCGTGTTGAAGAAGCAAAGAAGAAAACTGAAAAAATTGAAATTGTTGTGGAAATGTGGTTGGGTGAAGTAAAAAGTCTANTGGAAGAGGTGGAGAACCTGGAACATGAAATGAGGGAAAACAACACTGGTCTTCCAGGTTGCTGTCCTAACCTGAGAAAACATNACCTGTCAAAGCAAATGGTGAAAAAAACAAAAGCACTGATGGAACTGACCAGAAATAGCAAGTTTGAGNCATTTTCACACCCTGCTACACTTCCAAGCATCGAATATTTCTCTTCTGGCCACTTTACATATTTTGAATCAACAAAGTCAGCTTACAATCTACTTTTGGAGGCAATACAAGATGATGGCAGCTATGTGATAGGCTTGTATGGGATGGGAGGATGTGGCAAAACAACCCTTGTAAAAGAAATGGGTAAAAAAGCCAAGGATTTGAATCTTTTTGATCAAGTTGTANTTGCAACTGTGTCCCAAACTCCAAATGTTGGGAGGATTCAAGACGAAATCGCAGACTTCTTGGGTTTGACACTGGTTGAAAAAAGGGAACCAGGAAGAGCAAGACGAATATCACTTAGATTACAAGATGNGGAAAGGATTCTTTTGATCTTGGATGATGTTTGGGCAAGACTTAGTCTGGAGGATATTGGAATTCCTTTGAATGCTGATCCNAGAAGCTTCAAGGTCCTTCTAACCACTAGGCGCCAACAAGTATGTACTCTGATGGAGTGTCAAAGAAAGATTCCACTATNTCTCTTATCTGAGCCAGAATCTTGGATTTTGCTCCAAAAGCATACTTGTATTGATCACGATTCCTCCACTAGCTTATTAAATGGACTAGTGGAGGGAGTTGTTANGGAATGTAAAGGACTACCCCTAGCAATTGAGACTGTGGGGATGTCCTTGAGAGGAAAATCTGTCCATGAATGGAAGATAGCTTTNGATAGATTGAAGAATTCAAAGCCACTAGATATTGAAGAAGGTGTGAGAGACATTTTTGCATGCCTGCAATTAAGTTATGATTATCTTGGAAGTAAGTTGGCCAAGTCACTCTTCTTGATGTGTGGTCTTTTCCCAGAAGAGCACAATATCCCTATTGAAGATTTGTTTAGATTTGGAGTGGGGTTGGGTTTCTGTGGTGAAGTTGAATCATTTGACATAGCTAGGAGCCAGGTGATAGCCTCTACAAGCAAGCTCATAGATTCTTGCTTATTGATGCATTGTGAGGAGAGTAAATATTTATATGAAGTAAAGATGCATGATGTGGTTCGGGATGTGGCTCTTTGGATAGCATCCCAAGAGGACTGTGTCATCAATGTAAATCAAGNAAAGGCAAGGGATTGTTTTGCAATGTCTTCATGGTATAAGAAAATAGATGAACTTCCTAATCAACTTGATGCTCCCAAGCTTGAGGTTCTGCTAATACACACATTAAGTTCCTTGAAGCTATCAAATGCAACTTTTGAAGGCATAAAAGGGCTCAAGGTTATGGCTTTAGTTTGTGGAAAAGATAATGAGAGACTATCCCTATCCTTGCCGCTGTCAATCCACACTTTGACATATCTTCGTACTCTGACATTGGTAGGCTGGAAACTGGGTGATATCTCTTCTGTGGTAAGGCTAAAAGGACTAGAAATTCTTGATTTGCACAGAAGTGGCTTCAAGGAAGTGCCAAATGGAATTGAAGATGTAAATAAATTAAAGTTGCTGGATTTGTCAGAATGTGAAATTGAAGAAGATTGTTATGGAGTNATAGCAAGGTGTTCACAACTGGAAGAGTTATATGTCTTTGGAAGAGACAGAAACTTTGGAAGTATAGATTCACATGAATGCCTTCAGGACAGTTCTAATTACTCAAAGTTGCAGTTGCAGAGATATGTATTACAAATAGGACCGTATAAAGGACCTGTGAATGTGAACCTTGACGAAAAANGCAATCCAAGAATTCTGTACATAGAGGAGATGAATACCTCTACCTTAAGTACAACAACAAAGGATCTTCTCCAGAGAGCAGAAGAAGTGTATTTGGGGGACCTTTGTGGAGGCTGCAAAAATGTTCNCCCAACAATGTTTCGTGTTGTAGGAGGCATGAATCAGTTAACTAGCCTTACGCTTAATCACTGCTCAGAGCTAGAGTCCATTGTTGATACAATCTCTGATCAAGCAGATGCTGACCTCCTCAGATTGGAGGTGTTAGAGCTGAAAAGTATGGATAATATGAAAGAACTGTGTCATGGTCCACCATTACTTGCCTTTTTCCAAAATTTAAGAAGACTTGACTTATGGAAGTGCCAGCGGCTGCATAACATATTTCCAAGGGGATGCAACTTGTGCAATCTTGAGGTCCTAGAAGTATATGATTGTCCAATGTTGGTGTCACTGTTCCCAATGTCCGTTGCTAGAACACTGCAACTGCTACAAGATTTATCTATCGATAGATGCTGCAAGTTGGAGCAAATAATAGTAAATGAAGATGAGGAAATATCTCAAGTTTCAAAGAATTCTCGTTTGATGTTCCCCAAATTGAAGACATTGTTTGTGGATTCTAGTGACAAGTTNGAACATATATTTCCAATCCGTTGTGCTCAAGGCCTTGTGCAACTAGAAAGTATAAATATAGGTCGGNCCTCAGAGCTGAAATATATTTTTGGCCAACATGAGAATTGGGATGGGTCATCTTATCAGAACCAGGTCCACATTGAACTTCCTCTTTTGAAAGAAGTTAGACTCCAGGACCTCCCTAATCTTCTTAGCATTTCCCCNCATAACTCTCACTTAAGGTGGCCATCTCTAAAGGAAATGGATTGTGAAGCTTGCCCCAACTTTAGCACTNCGGGCATTAATATTTAG

Protein Sequence

>Glyur000254s00017604.1
MILFSGAWPPYYKMADIAISIAAKVMEYLFKPTIQQGKYLFGVGKIIRDLDGKKKEMXLTRDSVQNRVEEAKKKTEKIEIVVEMWLGEVKSLXEEVENLEHEMRENNTGLPGCCPNLRKHXLSKQMVKKTKALMELTRNSKFEXFSHPATLPSIEYFSSGHFTYFESTKSAYNLLLEAIQDDGSYVIGLYGMGGCGKTTLVKEMGKKAKDLNLFDQVVXATVSQTPNVGRIQDEIADFLGLTLVEKREPGRARRISLRLQDXERILLILDDVWARLSLEDIGIPLNADPRSFKVLLTTRRQQVCTLMECQRKIPLXLLSEPESWILLQKHTCIDHDSSTSLLNGLVEGVVXECKGLPLAIETVGMSLRGKSVHEWKIAXDRLKNSKPLDIEEGVRDIFACLQLSYDYLGSKLAKSLFLMCGLFPEEHNIPIEDLFRFGVGLGFCGEVESFDIARSQVIASTSKLIDSCLLMHCEESKYLYEVKMHDVVRDVALWIASQEDCVINVNQXKARDCFAMSSWYKKIDELPNQLDAPKLEVLLIHTLSSLKLSNATFEGIKGLKVMALVCGKDNERLSLSLPLSIHTLTYLRTLTLVGWKLGDISSVVRLKGLEILDLHRSGFKEVPNGIEDVNKLKLLDLSECEIEEDCYGVIARCSQLEELYVFGRDRNFGSIDSHECLQDSSNYSKLQLQRYVLQIGPYKGPVNVNLDEKXNPRILYIEEMNTSTLSTTTKDLLQRAEEVYLGDLCGGCKNVXPTMFRVVGGMNQLTSLTLNHCSELESIVDTISDQADADLLRLEVLELKSMDNMKELCHGPPLLAFFQNLRRLDLWKCQRLHNIFPRGCNLCNLEVLEVYDCPMLVSLFPMSVARTLQLLQDLSIDRCCKLEQIIVNEDEEISQVSKNSRLMFPKLKTLFVDSSDKXEHIFPIRCAQGLVQLESINIGRXSELKYIFGQHENWDGSSYQNQVHIELPLLKEVRLQDLPNLLSISPHNSHLRWPSLKEMDCEACPNFSTXGINI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00254	118000	121044	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000254s00017604.1	PF00931.17	NB-ARC	181	439	4.90E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.060
SRR1783600	control	2.055
SRR1783602	moderate drought stress	1.034
SRR1811619	moderate drought stress	0.998

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.204
DRR006520	Root Summer glycyrrhizin high producing strain	0.212
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.776
DRR006524	Root Summer glycyrrhizin low producing strain	0.798
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.455

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.581
SRR2868004	Drought Stress (root)	3.678
SRR2967015	Control (root)	2.630

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.053
SRR9715740	Leaf	2.514
SRR9715741	Leaf	8.894
SRR9715739	Root	0.290
SRR9715742	Root	0.755
SRR9715743	Root	0.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.361
SRR8749028	MeJA induced 9h	3.651
SRR8749029	MeJA induced 9h	4.387
SRR8749030	Uninduced	2.397
SRR8749031	Uninduced	2.068
SRR8749032	Uninduced	2.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.941
SRR8400027	Control - Root	2.541