Gene detail information of Glyur000254s00017602 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19390.2 | 3.00E-96 | Rho GTPase activation protein (RhoGAP) with PH domain |
| NR | XP_004491226.1 | 0 | PREDICTED: platelet binding protein GspB-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8RWQ4|RGAP7_ARATH | 4.00E-146 | Rho GTPase-activating protein 7 |
| trEMBL | tr|A0A072UFE1|A0A072UFE1_MEDTR | 0 | GTPase-activator protein for Rho-like GTPase family protein {ECO:0000313|EMBL:KEH28377.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00254 | 97582 | 109632 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000254s00017602.1 | PF14389.1 | Lzipper-MIP1 | 139 | 225 | 3.90E-21 |
| Glyur000254s00017602.2 | PF00620.22 | RhoGAP | 5 | 52 | 5.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.064 |
| SRR1783600 | control | 17.025 |
| SRR1783602 | moderate drought stress | 16.532 |
| SRR1811619 | moderate drought stress | 16.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.208 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.424 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.469 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.672 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.953 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.316 |
| SRR2868004 | Drought Stress (root) | 44.174 |
| SRR2967015 | Control (root) | 46.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.908 |
| SRR9715740 | Leaf | 13.139 |
| SRR9715741 | Leaf | 17.383 |
| SRR9715739 | Root | 11.303 |
| SRR9715742 | Root | 36.592 |
| SRR9715743 | Root | 33.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.447 |
| SRR8749028 | MeJA induced 9h | 26.598 |
| SRR8749029 | MeJA induced 9h | 15.392 |
| SRR8749030 | Uninduced | 12.700 |
| SRR8749031 | Uninduced | 10.281 |
| SRR8749032 | Uninduced | 9.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.140 |
| SRR8400027 | Control - Root | 50.326 |