Gene detail information of Glyur000254s00017593.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75520.1 | 5.00E-35 | SHI-related sequence 5 |
| NR | XP_007141493.1 | 1.39E-138 | hypothetical protein PHAVU_008G200700g [Phaseolus vulgaris] |
| Swissprot | tr|Q94CK9|LRP1_ARATH | 3.00E-76 | Protein LATERAL ROOT PRIMORDIUM 1 |
| trEMBL | tr|V7B6F1|V7B6F1_PHAVU | 5.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:ESW13487.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00254 | 28559 | 31819 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000254s00017593.1 | PF05142.7 | DUF702 | 140 | 300 | 1.30E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.459 |
| SRR1783600 | control | 70.789 |
| SRR1783602 | moderate drought stress | 76.998 |
| SRR1811619 | moderate drought stress | 76.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.215 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.022 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.199 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.924 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.771 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.042 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.599 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.056 |
| SRR2868004 | Drought Stress (root) | 14.735 |
| SRR2967015 | Control (root) | 13.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.508 |
| SRR9715740 | Leaf | 15.584 |
| SRR9715741 | Leaf | 18.842 |
| SRR9715739 | Root | 30.665 |
| SRR9715742 | Root | 42.548 |
| SRR9715743 | Root | 37.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.150 |
| SRR8749028 | MeJA induced 9h | 69.903 |
| SRR8749029 | MeJA induced 9h | 78.482 |
| SRR8749030 | Uninduced | 17.951 |
| SRR8749031 | Uninduced | 6.484 |
| SRR8749032 | Uninduced | 10.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.964 |
| SRR8400027 | Control - Root | 50.362 |