Gene detail

Gene detail information of Glyur000253s00020248.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05690.1	2.00E-180	Cytochrome P450 superfamily protein
NR	XP_003600878.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_001519436.1	3.00E-55	cytochrome P450 family protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q42569\|C90A1_ARATH	0	Cytochrome P450 90A1
trEMBL	tr\|G7JB77\|G7JB77_MEDTR	0	Cytochrome P450 family monooxygenase {ECO:0000313\|EMBL:AES71129.1}

Sequence

Transcript Sequence

>Glyur000253s00020248.1
TTCTTCCCCACACATCCTTTTCTTCTTCTAGACTCTCAGAAACACTGCAGAGGTACCCCCCACCCCCTCGTGTGCTCCTTCTTCCCCCCTCCATTAATGCCCCCTTCCTTCACACACTTCAAAACCATCACCATTCACCACCACCACCCAAACATACCCCTTCTTTTTCTCTCTCTCTCCATTTACTCATCCATATAAATATAGACACACACATACATAAATACATTAGTTTTTTGTTGCTCTCTATTTTCCATTAATGGCTTCTTCCCCAAAAGTACTGCTCTTCTTTGTCTTCATCACCATCGTCTCCACCGTGTTTCTCTTCCTCCTCCGTAAATACCGTTACCGGCGGCTCCGGCTACCGCCGGGGAGTCTAGGCTTGCCGTTGATCGGAGAGACGCTGCAGCTGATATCCGCGTACAAGAGCGACAACCCGGAACCGTTCATCGACCAGAGGGTGAACCGGTACGGTCCAATCTTCACGACCCACGTGTTCGGTGAGCCGACAGTGTTCTCGGCCGAACCGGAGACGAACCGGTTCATCCTNATGAACGAAGGGAAGCTGTTTGAGTGTAGCTACCCCGGTTCGATATCGAACCTGTTAGGGAAACACTCGTTGCTCCTCATGAAGGGTTCACTCCACAAGAGAATGCACTCACTCACCACGAGCTTCGCCAACTCCTCCATCATCAAGGATCATCTCCTACTTGACATAGACCGGCTCATCCGGCTCAATTTGGATTCCTGGTCCGACCGGGTTTTTCTCATGGAGGAGGCCAAGAAGCTAATGAGCTTTGATCCAGATGAATGGACTGAGAGTCTAAGGAAAGAGTACGTTCTTGTGATTGAAGGGTTCTTCACTCTCCCCTTTCCTCTTTTCTCCACCACCTACCGCAGAGCCATCAAGGCAAGAAGGAAGGTGGCAGAGGCACTAACGCTGATAGTGAGGCAGAGGAGAAAAGAGATCATTAGTGAAAGCAATTTTGAGAAAAAGAATGACATGCTTGGAGCACTGTTGGCCACCGGCGANCACTTCTCCGACGAGGAAATAGTGGATTTCATGTTGGCTTTGCTCGTCGCCGGTTACGAAACCACCTCTACCATAATGACTCTTGCGGTTAAGTTCCTCACGGAGACTCCTCTAGCCTTGGCACAGCTTAAGGAAGAGCATGACCAAATCAGAGCAAGGAGTGACCCAGAGGCAGCATTGGAATGGACAGATTACAAGTCAATGGCATTTACTCAATGCGTTGTGAATGAGACCTTAAGGGTGGCAAACATAATTGGTGGGATATTTAGGAGAGCAATAACAGACATCGACATAAAAGGTTACACTATTCCTAAGGGATGGAAGGTCTTTGCATCATTTCGTGCTGTGCATTTGAATCCTGAACACTTCAAAGACGCACGCACCTTTAATCCATGGAGATGGCAGAATAATAACTCAGAAGCTGCAGCAAGCCCTGGGAATGTATATACACCATTTGGGGGAGGGCCACGGTTGTGCCCTGGCTATGAGCTTGCCAGAGTTGTACTCTCNGTCTTCCTTCACCGCTTTGTCACGCGCTTCAGTTGGGTACCTGCTGAGGAAGATAAGTTGGTGTTTTTCCCAACCACAAGGACGCAGAAGAGGTATCCTATTATAGTGAAGCGGAGAGAGGAATCCACTAGACCAGACCATGTTATTGTNTAGTGATATGAGAATTGAGAGCACAGTTTAACCAGTTAATGTTCATTCTATATATAATAATAGTTAATAAAATTCTATCTACTANTTTAGAATTTAGAGTTTCATATACATGTGATCTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00253	214594	222767	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP90A1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09588	CYP90A1, CPD	EC:1.14.-.-	Brassinosteroid biosynthesis	map00905

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000253s00020248.1	PF00067.17	p450	36	137	2.70E-05
Glyur000253s00020248.1	PF00067.17	p450	203	448	3.70E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.691
SRR1783600	control	19.955
SRR1783602	moderate drought stress	22.897
SRR1811619	moderate drought stress	22.923

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.382
DRR006520	Root Summer glycyrrhizin high producing strain	15.254
DRR006521	Root Winter glycyrrhizin high producing strain	13.067
DRR006522	Root Winter glycyrrhizin high producing strain	12.644
DRR006523	Root Summer glycyrrhizin low producing strain	19.425
DRR006524	Root Summer glycyrrhizin low producing strain	19.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.826
SRR2868004	Drought Stress (root)	5.615
SRR2967015	Control (root)	6.486

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.173
SRR9715740	Leaf	51.625
SRR9715741	Leaf	57.626
SRR9715739	Root	10.080
SRR9715742	Root	14.888
SRR9715743	Root	12.832

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.865
SRR8749028	MeJA induced 9h	4.518
SRR8749029	MeJA induced 9h	2.945
SRR8749030	Uninduced	34.919
SRR8749031	Uninduced	9.715
SRR8749032	Uninduced	22.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.931
SRR8400027	Control - Root	7.169