Gene detail information of Glyur000253s00020244 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40090.1 | 0 | ABC2 homolog 9 |
| NR | XP_004500484.1 | 0 | PREDICTED: putative ABC1 protein At2g40090-like [Cicer arietinum] |
| COG | YP_004864146.1 | 4.00E-37 | protein kinase [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|O04212|Y2090_ARATH | 0 | Putative ABC1 protein At2g40090 (Precursor) |
| trEMBL | tr|I1LMQ9|I1LMQ9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G35200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00253 | 158957 | 166692 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000253s00020244.1 | PF03109.11 | ABC1 | 145 | 275 | 3.00E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.172 |
| SRR1783600 | control | 5.262 |
| SRR1783602 | moderate drought stress | 5.344 |
| SRR1811619 | moderate drought stress | 5.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.960 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.967 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.843 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.135 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.868 |
| SRR2868004 | Drought Stress (root) | 11.799 |
| SRR2967015 | Control (root) | 9.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.113 |
| SRR9715740 | Leaf | 4.077 |
| SRR9715741 | Leaf | 3.318 |
| SRR9715739 | Root | 2.079 |
| SRR9715742 | Root | 4.744 |
| SRR9715743 | Root | 4.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.982 |
| SRR8749028 | MeJA induced 9h | 6.695 |
| SRR8749029 | MeJA induced 9h | 3.969 |
| SRR8749030 | Uninduced | 3.022 |
| SRR8749031 | Uninduced | 3.260 |
| SRR8749032 | Uninduced | 3.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.340 |
| SRR8400027 | Control - Root | 14.039 |