Gene detail

Gene detail information of Glyur000253s00020242

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11210.1	5.00E-106	SGNH hydrolase-type esterase superfamily protein
NR	KHN36379.1	2.05E-172	GDSL esterase/lipase CPRD49 [Glycine soja]
COG	NP_267879.1	8.00E-08	hypothetical protein L161059 [Lactococcus lactis subsp. lactis Il1403]
Swissprot	tr\|Q9SRM5\|CPR49_ARATH	7.00E-142	GDSL esterase/lipase CPRD49 (Precursor)
trEMBL	tr\|I1LMR2\|I1LMR2_SOYBN	1.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G35240.2}

Sequence

Transcript Sequence

>Glyur000253s00020242.1
ATGGTTGGACCTGCGAGGCCTCAGTTCGTTCTCTTCGGATCCTCCATCGTGCAGCTGTGTTTCAGCCATGGCGGTTGGGGTTCCATTCTTTCTGACATTTACTCCCGCAAGGCAGACATATTGTTAAGAGGATACTACGGATGGAACTCACGACGTGCTCTCCAAGTCCTGAGTCAAGTTTTCCCAAAGGATGCCGCTACACTGCCTTCTCTTGTGATAGTTTATTTTGGAGGCAATGATTCCATGGGCCCTCACCCATCTGGTCTAGGNCCTCATGTGCCTCTTCATGAATACATTGCAAACATGAGAAAGATTCTGATTCATATTCAGAGCCTCTCTGAAAGGACACGTATCNTTGTTCTCAGCTGTCCACCTGTCAATGAGGAAAAAGTGCGTGCAAGCACAAGTGGAGTTTTAAGTGAGCTGGTAAGAACAAATGAACTATGCGGAAGCTATTCAGAAGCTTGTATAAAGCTATGCCAGGAACTGGGTGTGAAAGTCGTTGATCTTTTTAATGCACTACAGAAGAGAGATGACTGGATGAATGCTTGTTTTACTGATGGTGTCCATTTAGCAGCAGAGGGAAGCAAAATTGTGGTGAAAGAGATACTGAAAGTACTTAAGGAGGCTGAGTGGGAGCCATGCCTCCACTGGAAGTCAATGACCACTGAGTTTGCAGCAGATTCACCATATGATCTTGTTGCTGCCAATGGGAAAACCACACTGAATCCTTCTGAGTGGACTTTTTACAGAGAGATTCAGTGGGACTAATAAAGGTTGTTGGGTTGTCAACCTTATAACATAATATATTTCCTTTGGTTTTCTTTATTTTACCTAAGTATTGATTGGGTTTTTTAGTGACAGCAATATTGCCCTATATTTTAGATTAGTCTTTGTCATTCATCAAGTTTGTTATTTTATCATTTAACTGAAAATAACGCTGATAGAGTAGATTCATATATAATGGCTATATGCCAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00253	104977	109126	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000253s00020242.1	PF00657.17	Lipase_GDSL	10	203	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.029
SRR1783600	control	4.115
SRR1783602	moderate drought stress	2.873
SRR1811619	moderate drought stress	2.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.353
DRR006520	Root Summer glycyrrhizin high producing strain	0.387
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.565
DRR006524	Root Summer glycyrrhizin low producing strain	0.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.974
SRR2868004	Drought Stress (root)	6.358
SRR2967015	Control (root)	7.031

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.854
SRR9715740	Leaf	1.065
SRR9715741	Leaf	1.722
SRR9715739	Root	8.606
SRR9715742	Root	3.176
SRR9715743	Root	4.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.723
SRR8749028	MeJA induced 9h	1.594
SRR8749029	MeJA induced 9h	1.554
SRR8749030	Uninduced	2.455
SRR8749031	Uninduced	1.946
SRR8749032	Uninduced	0.819

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.789
SRR8400027	Control - Root	34.790