Gene detail

Gene detail information of Glyur000253s00020237

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55920.1	2.00E-71	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_004500488.1	8.39E-132	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like [Cicer arietinum]
COG	YP_005366669.1	4.00E-69	peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q8L8W5\|CP21B_ARATH	2.00E-100	Peptidyl-prolyl cis-trans isomerase CYP21-2 (Precursor)
trEMBL	tr\|G7JB89\|G7JB89_MEDTR	1.00E-125	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU000493}

Sequence

Transcript Sequence

>Glyur000253s00020237.1
CAACGAACAACCTCTTGCTGGACCAATCATGTTAATCCGATCCAAAACATTATACTGACACACATGATGATGTTACTCTAACAATTGTTGAGTTCCTTGATTGATTTTTGCATCAGAAAAAAATGGCCTTCAGAGCCACTGGAACACTGATTTCGGCGTGTCTCATTTGGGTTTTCTCCCTCTGCGCAATCATTGCATTCTTTCAGCTCAAGTTGGTAGAGAACACAGCCAAAAACGCTTCTTCTAACCCTCACAACAACAACAAGTTAATCACAACTCAAGATACCCAATTGGGAGAGGATTTGGAGGGTGTGACCCACAAAGTGTTTTTTGACATTGAGATCGATGGCAAATTAGCGGGTCGCATAGTAATGGGCCTTTTTGGGAGTACAGTACCGAAAACTAAAACTTTCGAGCGCTTTGTACCGGTAGCTCAGCAACTTTCCTTCCGTTCCTTACTTAGTCATCACATTTCAGGAGAGAAAGGGGTGGGAAGAAGTGGGAATCCTCTTCATTATAAAGGGAGCACATTCCATAGGATAATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAANCTTCAAGTTGAAGCATTCTGGGCCAGGATACTTATCCATGGCAAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACAACAGTAAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTTTGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCCAAAAGTAAAGTTGTCATATTAGACAGTGGGGAATTAACTTCATGACATGGTTTATACAAGTTGAGATTGATTCTACTACGATGACTAGTCAGCTTTTCCCATGATTCACAAATTCCTTGTGTATACTTTATCATTTAGTAAATGAATAAAATCAATTACTATATTCCNATATAAGAAAAATAGGTCTCTAGTTGGACATGTGTCACTTCCTAGGCTGGGACACGCGTCATCTCCCGGGTTTTTTCATTTTCTGCCAAAACTGTTTAGTTTGTTGGATTATTTTTTACTATTTATGTTAGGAAAAGANCTGTATTTTGTANGGATTCATCTGCTAGTTTGTTGATTAAAAGTTTGTATTCGTGTAATTTATAGCTGTATTTTTGCTGTCTTGCTTGTCTACAATATTCTTGATAAAAGGGAAGGAAATTTTTTAGGGATTGCTGGAGATGGTAATCATTAACAATAGACATCAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00253	88418	91658	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000253s00020237.1	PF00160.16	Pro_isomerase	69	245	3.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.046
SRR1783600	control	6.904
SRR1783602	moderate drought stress	6.527
SRR1811619	moderate drought stress	6.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.207
DRR006520	Root Summer glycyrrhizin high producing strain	13.850
DRR006521	Root Winter glycyrrhizin high producing strain	19.338
DRR006522	Root Winter glycyrrhizin high producing strain	18.541
DRR006523	Root Summer glycyrrhizin low producing strain	12.672
DRR006524	Root Summer glycyrrhizin low producing strain	12.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.523
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.974
SRR2868004	Drought Stress (root)	19.680
SRR2967015	Control (root)	17.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.051
SRR9715740	Leaf	5.433
SRR9715741	Leaf	5.041
SRR9715739	Root	4.161
SRR9715742	Root	7.793
SRR9715743	Root	5.458

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.947
SRR8749028	MeJA induced 9h	22.068
SRR8749029	MeJA induced 9h	11.731
SRR8749030	Uninduced	20.027
SRR8749031	Uninduced	7.658
SRR8749032	Uninduced	8.341

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.880
SRR8400027	Control - Root	25.067