Gene detail

Gene detail information of Glyur000253s00020234

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G05660.1	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
NR	XP_004500492.1	PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum]
Swissprot	tr\|Q9FFK8\|NFXL2_ARATH	NF-X1-type zinc finger protein NFXL2
trEMBL	tr\|G7JBA9\|G7JBA9_MEDTR	NF-X1-type zinc finger protein NFXL2 {ECO:0000313\|EMBL:AES71161.2}

Sequence

Transcript Sequence

>Glyur000253s00020234.1
ATGGCATCAGCAGCATCACCGAAGCCACTTTCCGATTCCGACTCCGACGAAGGCTCCTCCACATCCTTGCTCCTCCGCCACTCCGACCTCTCCGAATCCATATTCAAATCCTACTTCAACTTCACCGGCCACTCCTCAACCACCGCCACCGCCGCCGACCTCTCGAAGATCCGATCCTTCCTCGCNTCCTCCTCCTCCGGCGCCCTATCGTGCCTCATATGCCTTGAGCGCATCAAGCCCTCCGACCCCACGTGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCACCTCTTCTGCATCCAGAGCTGGGCCCGCCAAGCGTCCGACCTCTCCGCCGCACGCGCCTCCACGCGCCTCCCCATAACCCCCGAAACCGCCTCCGAAACCTCCCTCTGGAACTGCCCCAAATGCAGGTCCGAATACCCCAAATCCCACATCCCCAAAACCTACCTCTGCTTCTGCGGCAAATTAGAAAACCCTCCCAGCGACGACCCTTGGGTCCTTCCCCATTCCTGCGGCGACATTTGCGGAAGACCGTTGAAAAACCGTTGCGGGCACAACTGCCTATTGCTCTGCCACCCTGGCCCTTGCCCGTCCTGCCCGCAGCTCGTCAAAGCTCAATGCTTTTGTGGGTCCCACGAAGACGTTCGGCGATGCGGGTTCAAGGAATTCTCCTGTGACCGCCCTTGCTCCAAGGTTTTGGATTGTGGGGTCCACAGCTGCGTTCAGATTTGCCACCGTGGCACTTGCCCACCGTGCAGGACACGTGGCGTGTATCGGTGTAAGTGCGGGAAGGTGGAAGAGGAGAGGGAGTGCTGTGATCGTGTTTTCCGATGTGGGAGTCCCTGTGAGAAGAGGCTTAGTTGTGGGAAGCATGTTTGTGAGAAGGGGTGTCATGTTTCTGGTGAGTGTGGTGAGTGTCCCCTTCAGGGGAAGAGAAGTTGCCCCTGTGGGAAGAGGGTCTATGAGGGAATGCCTTGTGATGCTCCTTTGCAGGTTTGTGGGTCCACCTGTGATAAAATGTTGCCATGTGGGTATCATAGGTGCCCTGANCGGTGCCACCGTGGACAATGTGTTGAGACTTGTAGGATTGTTGTGAGGAAGTCATGTCGCTGTGGGAGCCTTAAGAAAGATGTTCCTTGCTATCAAGATTTGGCTTGTGAGAGGAAGTGCCAGAGGATGCGTGNCTGCGGTAGGCATGCGTGTAAGCGTCGCTGCTGCGATGGGGATTGCCCTCCTTGCTCAGAGANATGTGGCAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCGTGCCATAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATTACGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGTCGTAAACCATGTCCTATTAAGCCTTTGTGCCGGCATTCATTAAACTGCAAGCCACATAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAGTACCAATGTGGCCATACATGCAAATTAAGGTGTCATGGTGCTAAGCNTCCTCCCAATCCAGAGTTTACTCTCAAGCCAAAGAAAAAGAAGGTTATACAACANAGTGAAAGTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGTGTGGAGATCATGTGTTGGGCAGCACATTGGAGAAGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTCTACTGTGAAAATTTATGTGGCAACCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAACCAGTCTCCCATGAACCAGTTGCCGAGAAGCGAGCCCTGTGAAGATTGTTCGCTTCGTTGCCAGAAGGAAAGAGAGCCTATGTGTCCTCATCACTGCCCTCGGCGATGCCATCGTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCACTGTGGTGCAATGGTCCATGTTTTTGAGTGCATATATTACAACAGCTTGTCTGCAAAGAGCCAAGAGACTGTCCGGTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGCACACATCTATGCCCAGAGATATGTCATCCTGGTCAGTGCCCAAATCCTGAGAAATGCTGTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACATTGAAAAAGGAGTGGCTTTGTCAAGATGTCCAAGCAGCACATAATCGTTCCGGTTGCCATCCAAAAGATATACCAAAAAATCAATTTGGAATTGGACTTATTCCTTGCAATTCTGACTGTAAGAGTAAANTGCAGGTTGTTGAGTCAGAACTGCAATTACGTAAATCTAGAGTTACTGAGGTAAAGGAGCCAGATAAAGAAAAATCAGTTCCAAAGCGACGAAAAAGGCGAGAGAGGCTTCTTCTGTTTGTCTTTATTTTGGTCATACTTCTTGCTGCTACTTATTATGGCTACAAAGGACTGTTACGGCTCAATGATTGGATGAATGAAGTTGAGGAACAAAGACAGAGATATTCTCGAACCAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00253	65413	72879	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.168
SRR1783600	control	9.194
SRR1783602	moderate drought stress	12.182
SRR1811619	moderate drought stress	11.580

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.938
DRR006520	Root Summer glycyrrhizin high producing strain	7.774
DRR006521	Root Winter glycyrrhizin high producing strain	9.666
DRR006522	Root Winter glycyrrhizin high producing strain	9.297
DRR006523	Root Summer glycyrrhizin low producing strain	9.980
DRR006524	Root Summer glycyrrhizin low producing strain	9.811
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.731
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.673
SRR2868004	Drought Stress (root)	15.350
SRR2967015	Control (root)	17.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.936
SRR9715740	Leaf	3.128
SRR9715741	Leaf	6.001
SRR9715739	Root	2.740
SRR9715742	Root	7.307
SRR9715743	Root	6.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.258
SRR8749028	MeJA induced 9h	10.630
SRR8749029	MeJA induced 9h	6.302
SRR8749030	Uninduced	3.486
SRR8749031	Uninduced	1.948
SRR8749032	Uninduced	1.551

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.187
SRR8400027	Control - Root	15.758