Gene detail information of Glyur000252s00012686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61840.1 | 0 | Exostosin family protein |
| NR | KEH20965.1 | 0 | beta-1,4-xylosyltransferase IRX10L-like protein, putative [Medicago truncatula] |
| COG | YP_677520.1 | 2.00E-06 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q940Q8|IX10L_ARATH | 0 | Probable beta-1,4-xylosyltransferase IRX10L |
| trEMBL | tr|A0A072U550|A0A072U550_MEDTR | 0 | Beta-1,4-xylosyltransferase IRX10L-like protein, putative {ECO:0000313|EMBL:KEH20965.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 217734 | 221472 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012686.1 | PF03016.10 | Exostosin | 50 | 345 | 1.10E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.443 |
| SRR1783600 | control | 25.869 |
| SRR1783602 | moderate drought stress | 20.235 |
| SRR1811619 | moderate drought stress | 20.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.437 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.520 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.861 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.504 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.777 |
| SRR2868004 | Drought Stress (root) | 31.164 |
| SRR2967015 | Control (root) | 30.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.001 |
| SRR9715740 | Leaf | 11.644 |
| SRR9715741 | Leaf | 11.785 |
| SRR9715739 | Root | 15.493 |
| SRR9715742 | Root | 20.883 |
| SRR9715743 | Root | 18.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.201 |
| SRR8749028 | MeJA induced 9h | 36.507 |
| SRR8749029 | MeJA induced 9h | 39.207 |
| SRR8749030 | Uninduced | 12.812 |
| SRR8749031 | Uninduced | 4.604 |
| SRR8749032 | Uninduced | 5.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.812 |
| SRR8400027 | Control - Root | 37.131 |