Gene detail information of Glyur000252s00012680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51030.1 | 4.00E-122 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004503819.1 | 0 | PREDICTED: (+)-neomenthol dehydrogenase-like [Cicer arietinum] |
| COG | YP_007148857.1 | 2.00E-52 | short-chain alcohol dehydrogenase [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q9M2E2|SDR1_ARATH | 3.00E-57 | (+)-neomenthol dehydrogenase |
| trEMBL | tr|G7J2S1|G7J2S1_MEDTR | 0 | Short chain dehydrogenase/reductase {ECO:0000313|EMBL:AES72986.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 194445 | 196540 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012680.1 | PF00106.20 | adh_short | 38 | 156 | 2.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.040 |
| SRR1783600 | control | 0.020 |
| SRR1783602 | moderate drought stress | 0.063 |
| SRR1811619 | moderate drought stress | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.238 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.120 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.247 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.056 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.318 |
| SRR2868004 | Drought Stress (root) | 1.084 |
| SRR2967015 | Control (root) | 0.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.509 |
| SRR9715740 | Leaf | 0.625 |
| SRR9715741 | Leaf | 0.273 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.049 |
| SRR9715743 | Root | 0.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.976 |
| SRR8749028 | MeJA induced 9h | 2.941 |
| SRR8749029 | MeJA induced 9h | 2.402 |
| SRR8749030 | Uninduced | 8.415 |
| SRR8749031 | Uninduced | 4.796 |
| SRR8749032 | Uninduced | 2.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.412 |
| SRR8400027 | Control - Root | 0.362 |