Gene detail information of Glyur000252s00012677 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61800.1 | 2.00E-144 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_006586321.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g61800-like [Glycine max] |
| Swissprot | tr|Q9FLS9|PP441_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g61800 |
| trEMBL | tr|K7L4A0|K7L4A0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G00940.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 181690 | 183177 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012677.1 | PF13041.1 | PPR_2 | 180 | 208 | 4.30E-08 |
| Glyur000252s00012677.1 | PF01535.15 | PPR | 213 | 242 | 1.10E-07 |
| Glyur000252s00012677.1 | PF01535.15 | PPR | 288 | 312 | 0.27 |
| Glyur000252s00012677.1 | PF01535.15 | PPR | 315 | 345 | 0.039 |
| Glyur000252s00012677.1 | PF01535.15 | PPR | 350 | 376 | 0.0071 |
| Glyur000252s00012677.1 | PF01535.15 | PPR | 388 | 415 | 0.011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.579 |
| SRR1783600 | control | 2.609 |
| SRR1783602 | moderate drought stress | 3.087 |
| SRR1811619 | moderate drought stress | 3.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.293 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.129 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.855 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.540 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.396 |
| SRR2868004 | Drought Stress (root) | 5.193 |
| SRR2967015 | Control (root) | 6.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.255 |
| SRR9715740 | Leaf | 1.499 |
| SRR9715741 | Leaf | 0.726 |
| SRR9715739 | Root | 1.781 |
| SRR9715742 | Root | 1.735 |
| SRR9715743 | Root | 1.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.683 |
| SRR8749028 | MeJA induced 9h | 4.032 |
| SRR8749029 | MeJA induced 9h | 5.209 |
| SRR8749030 | Uninduced | 0.854 |
| SRR8749031 | Uninduced | 0.379 |
| SRR8749032 | Uninduced | 0.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.105 |
| SRR8400027 | Control - Root | 1.741 |