Gene detail

Gene detail information of Glyur000252s00012671.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51060.1	0	NADPH/respiratory burst oxidase protein D
NR	XP_003630437.1	0	Respiratory burst oxidase-like protein [Medicago truncatula]
COG	YP_007146260.1	3.00E-82	putative ferric reductase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q2HXL0\|RBOHC_SOLTU	0	Respiratory burst oxidase homolog protein C
trEMBL	tr\|G7LGI5\|G7LGI5_MEDTR	0	Respiratory burst oxidase-like protein D {ECO:0000313\|EMBL:AET04913.1}

Sequence

Transcript Sequence

>Glyur000252s00012671.1
CGTGTATGTATTCATGTATGTATATATATAGAGAGAGTGCAGAGCCAGCAAGCAGCTAATAGAAAAAGGTGTTTGAGGGTGTGAGACAAAAGAAAGAGCAACATGGGTGGATCTTCTGCAGATCTTCATCATCATGAATCTGATATAGAGCTCATTGACGCTGTCAACAANAGCGCTTCTGAGTCCAATGCTGGCGCCACCGATGTGGGACACAGCAAACCCAAGAAGGAGCAAGAAGAAGCACAGTANGTTGAGGTGACCATGGACATTCAAGGTGACTCTGTTGCCTTTCACAGTCTCNAAACCGTTGCCGACAGCAACACGGACCAGAAACCAGAACTAGCAAAAAAATTGGAGAAGAAAACCTCGGTTGTTGCCTCTCTGGTGCAGAATGCAACCATTCGCATGAAACACCTGAANCGTTTGGCATCGTTTTCGAANCCAGAACCAGCAAAGAAATTGGAGAGGACAAAGTCTGCAGTAGCTCATGCTCTCACGGGACTCAAGTTTATCAGTATGACCGATGCTGGTGCAGAATGGGGTAAGGTCGAGAAGGTGTTTGACCANCTCACTGCTACCACTGATGGCTATCTTCCTCGTGCTCTCTTTGGCAAATGCATAGGTATTCAGGGGNGTTCCATTAACAAGATCCAGATGAGGGAGTTCTGGGACCGTATTTCTGACCAGAGCTTTGATTCTAGGCTCAAAACATTCTTTGACATGGTTGACAAAGATGCAGATGGCAGAATTAACGAGGAAGAGATTAAAGAGATTATATGCCTAAGCGCCACTGCCAACAAACTGTCAAANATCCAGAAACAAGCAGAGGAATATGCGGCTTTGATTATGGAAGAACTAGACCCAGATGGCACAGGATATATCATGATAGACAACCTGGAGAAGCTCTTATTGCATGGACCAGAGGAAACTACAAGGGGAGAAAGTAAGTACCTGAGCCAAATGCTAAGCCAAAAGCTTAAGCCAACACTGGTGGACAATCCTATTAAGAGGTGGTATAGAGATGCCAAGTACTTCTTGCAGGACAATTGGCGAAGAGCTTGGGTATTGGTACTGTGGATTGGTGTGATGTCAGGTCTATTTGCCTATAAATTCGTGCAATATCGGAGAAGAGCTGTTTATGAGGTGATGGGCCATTGTGTATGCATGGCAAAAGGTGCTGCTGAAACACTTAAATTGAACATGGCTCTTATCTTGTTGCCTGTTTGCCGAAACACCATCACCTGGCTCAGGAATAGGACCAAGCTAGGTGTTGTAGTTCCTTTTGATGACGGAATTAACTTCCACAAGGTGATAGCTGCGGCAATAGCAGTTGGTGTTGGTATACATGCTATTTATCATCTTGCTTGTGATTTCCCTCGNCTACTTCATGCAAGCAATGAGAAGTACAAGCTCATGGTGCCTTTTTTCGGAGATAAACCATCAAATTACTGGTNTTTTGTCAAATCGTGGGAAGGGGTAACAGGGATTCTAATGATTGTGTTAATGGCAATAGCCTTTACGCTGGCCAATCCTAGATTCAGGAGGGGTCGCACCAGACTACCCAAACCCTTCAACAGACTCACAGGCTTCAATGCCTTTTGGTATTCCCATCACCTCTTCATCATTGTCTATGCCCTGTTGGTTGTGCATGGAATCAAACTNTACTTGACTAAGGATTGGTACAAGAAAACGACTTGGATGTATCTGGCTGTTCCCATCATCATTTATGTATTGGANAGACTGATTAGAGCACTTAGATCGAGCATCGAATCTGTGAGAATATTAAAGGTGGCTGTTTATCCTGGAAATGTGTTGGCAATTCATATGACAAGGCCTGACGGGTTTGATTACAAGAGTGGACAATACATGTTTGTCAATTGTGCTGCTGTGTCTCCATTTGAATGGCATCCATTTTCCATAACTTCAGCCCCTGATGATGATTACCTTAGCGTTCACATCAAAATACTTGGTGATTGGACTCGAAGTCTAAAAGCCAAATTCTCACAGGCGTGTCAGCCAGCCGTCAATGGACAGAGTGGACTTCTAAGAGCTGAATGCTTGAAAGGAAAAGGAGATAACAGCCGAAGTACTTTCCCTAAACTTCTGATTGATGGTCCGTATGGAGCGCCAGCACAAGACTACAGGGAGTATGAGGTGGTTTTACTTGTGGGTCTGGGAATAGGGGCTACCCCAATGATAAGTATACTAAAGGACATGGTCAATAATTTCAAGGCCATGGAAGAGGAAGAGGGGTCCGCAATAGAGGAGGGATCACCAACGATGACCAACCAAAGAGACGATAGGTTCAGTGACTTCAAGACAAGGAGGGCATACTTCTATTGGGTGACAAGAGAGCAGGGTTCCTTTGATTGGTTTAAAGGGGTGATGAACGAGGTAGCNGAAGAGGACAGAAGGGGAGCGATTGAGCTACATAGCTACTGCAGCAGCGTCTACGAAGAGGGTGATGCTCGCTCTGCTCTTATTGGTATGTTGCAGTCTATAAACCATGCAAAGAATGGCGTAGACATTGTCTCTGGCACTCGCGTGAGGTCTCACTTTGCCAAACCCAATTGGCGCAGTGTCTACAAGCGCATTGCGCTTAATCATCCAGAAGCCCGAGTTGGGGTATTTTACTGTGGGCCATCCAACCTGACCCATGGGCTTCGTCAGCTAGCACTGGATTTCTCTCACAACACATCCACCAAGTTCGACTTTCATAAAGAAAATTTCTGATAAGGAAATCATTTGTGTCTTTTCTGTTGATAACCTAAGGTGCGTTTCCACCCACGTCCTACGGTTGTAATATACTCATAGCTTTGTAAAAGGACCAAATGCTAAAGGTGTGGTAGGATGGCCCTGTCAATGTATAAGCGGGTCGTCATGAATCTGTATAAATTTATGGAGAAATACCATGAGAATGGTTATTCTTTTTCTTTTTCTTTTTGTAATCCCAGGAGAACGGTCCTGCTAGAAAGAAACAGGACGGGAAATAATTTGTCCTGTGAATGCAATTAATTTTATAGTTTATATTTTAACCCACAATATCTTGATTGATCGCAAAATCCAGGAATATTCATTTAGATACTCTATGGCTGGATTTGTTATTTGTGTTTAAGCATTTCCAATGGAAGTTGCTTAAAACTTAAATAACTTCCATCAGTTGATTTCAGGAGTGCATCTAGTTGGCATCACTTGTGAATAACTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	149650	156667	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13447	RBOH	EC:1.6.3.- 1.11.1.-	MAPK signaling pathway - plant	map04016
			Plant-pathogen interaction	map04626

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0004601 peroxidase activity

GO:0005509 calcium ion binding

GO:0016491 oxidoreductase activity

GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012671.1	PF08414.5	NADPH_Ox	119	176	5.10E-15
Glyur000252s00012671.1	PF13405.1	EF-hand_6	200	225	0.00067
Glyur000252s00012671.1	PF01794.14	Ferric_reduct	358	514	2.90E-16
Glyur000252s00012671.1	PF08022.7	FAD_binding_8	557	676	1.70E-30
Glyur000252s00012671.1	PF08030.7	NAD_binding_6	683	858	1.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.302
SRR1783600	control	41.602
SRR1783602	moderate drought stress	34.007
SRR1811619	moderate drought stress	33.777

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.634
DRR006520	Root Summer glycyrrhizin high producing strain	31.367
DRR006521	Root Winter glycyrrhizin high producing strain	6.227
DRR006522	Root Winter glycyrrhizin high producing strain	5.998
DRR006523	Root Summer glycyrrhizin low producing strain	30.885
DRR006524	Root Summer glycyrrhizin low producing strain	30.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.223
SRR2868004	Drought Stress (root)	47.865
SRR2967015	Control (root)	77.979

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.095
SRR9715740	Leaf	21.477
SRR9715741	Leaf	25.917
SRR9715739	Root	14.587
SRR9715742	Root	84.694
SRR9715743	Root	75.161

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.751
SRR8749028	MeJA induced 9h	4.101
SRR8749029	MeJA induced 9h	2.474
SRR8749030	Uninduced	9.648
SRR8749031	Uninduced	9.433
SRR8749032	Uninduced	12.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.231
SRR8400027	Control - Root	92.271