Gene detail

Gene detail information of Glyur000252s00012670

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G07400.1	forkhead-associated domain-containing protein / FHA domain-containing protein
NR	XP_004503857.1	PREDICTED: uncharacterized protein LOC101492227 [Cicer arietinum]
trEMBL	tr\|G7LGI2\|G7LGI2_MEDTR	Tyrosyl-DNA phosphodiesterase {ECO:0000313\|EMBL:AET04910.1}

Sequence

Transcript Sequence

>Glyur000252s00012670.1
ATGGTCGATTCGGATTACAATCGCAAGAGACCATTCCCACACGATCCTCCTTCTCCCAACAAAAAACCGAGGACCATTGTTGCAGCCTCCGTCGTTTTGAACCATTTCGATGTCCCCCTGTTTTCTACCACCAACGACGGCGCCGTTTCGCGCTGCGACTCCATGCGCCTTCACGCGGACCAGCCGTACATGATCGGCCGCGGACCACGCGACTGCGACTTCGTCTTCCGTGACCGGCGCGTGAGCAAGCGCCACTGCCAGATCCTCTTCGACGCTTCACTTCGCAAACTCTACATCCTGAGCGGGATTCTGTTACGCAGCGATTCCACCGCCGAGTCTCGTCTCGTTCACGAATTCAGGAGAAGGGTGNTGGCGGCGTCTCGTGGCGGCAGCGAGGGTTTTCCGCTTCTAGAAGCTTCCAACGGGGTTTTCGTGAACGGCGTCGAGATTNGAAACGGAACGGCGGTGGAGTTAACGGAGGGAGATAGGGTGTCGCTGGTTTGTGGAAACGAGAACGGTTCGTGTGGGATTTTGAACCGGATTGGGTTTGTTGTGGAGAGAATTGTTCTCGAAGGGTGTGATGTNGATGGTGGTGTTGAAATTGATGGGTTAACGTCCTCGGGGCACTCCCAAAGTGGGAAACGGAGCAAGAGGGTTTTTGCTGTGAAGGCCAATGTTTCAAGGTGTGAGAGAGTTGTTGGGAGGGCAAGGTTTCTTCTAGATAGGTGCAGAGACATATTGCTCAGTGATGATCCCTTNTCTTACATTCGGCATGCTGTTTCGGATTTACAATGTGGGTTTAAGTGTGGCCGTAGCACCGAGTTACCGCAGAGGGTGATGGAAAACACAGGTATTGCTAACGTGCAGTCAAGTTCAGNTTTACTTTGTGATAGTAAAGTGATAGATTTGGAGCCAGAAAGTGACCCTTTTGGTCAAAAAGGAAATTTAGAAGTTGCTAGTACTTATAAAAATCCTAATTCAATCCCGTTGGATTCTATAGGAAAGGATGATCTTCCTTCTCATGTCAACAGACAGGAAGAAAAACATGGAAGCATTTTTTATCCATCGCCTGGTACTGTGCGGTCAAGTTCAGCTTTACTCTGTGAGAGTAAAGTGATGGATTTGGAGGCAGAAAGTGATCCTTTTCGTCGAGAAGGGAATTTGGGAGTTGCTTGTGTGAATGGCATTGCTGATAAGAATCCTAATTCGGTCCTTTCAGATTCTATATGGAAGGATGATTTTCCTTTTGATGGCAACAGGCAGGGGAAAAAACATGGAGGCATTTTTTANCCACCGCCTGGGAAGAATTTTTACCTGAATCGCCTTGAATATATGAACCATGGTTCATCGGGTCTTCATCAATCCATATCTCTCCCTGAACTTATTCATCCTATTGAAAGCGTGTCAAGGATGTTCATTGCAACATTCACAATCACAATCGCTTGTCACAATGCTGAGAGATGTTGGAGTTCGAGACCTGATGAAAGAGTATTTGTGCCTTACCAGGATTATCCTAACCTAGTTGTAGTGTATCCTCCATTCCCTGAAACCATAGCATTTGGTGGTAATAACCGCAAGAAACAGGGAATCGCTTGCCATCATCCAAAGTTGATTNTTCTGCAAAGAGAAGATAGTATCCGAGTTGTCATTACATCTGCAAATTTAAATGAAAAACAGTGGAAGGGTGTGACTAACACTATATGGTGGCAAGATTTCCCTCATGCCATTTCGGTTGATTTTGCATCACTTTTCCAAAAAATTGATGATGGTGAAATTCATAGAGATGCAAAATGTGATTTTGCTGCCCAGTTGGCTGGGTTTATGGCATCTCTTCTTATTGATGTGCCCAGCCATGCTCACTGGATTACTCAACTAACAAAATATGACTTCGGAGGTGCAACAGGACATCTTGTTGCTTCAGTACCTGGAATTCACTTTTACAGAACTTCTATTCTCTCGGAATCCTTTCAGTCCTCTCCTTTTCTTGGTTCAGTTGTGGCATCTGTGGTTGGTTTGAGCCATCTTTTCCGTAATGTGGCAGACTCAAATGGTACAAGGCTAAAAGCCCTGGCTGCTTTCCTTGGAAAGTCTTGTAAGAATGCTTATGGNAGGTTGGAGATCCTTTTAAAAAGAAATCCCAATGTGCCTGCTGATGAAAATGCTGTTAGCATTCTTGTTCCCAACCCTGATCAAACTCCTGAGGGAGATTATGTTCAACTGGGTTTTCTGCCTAGAAATGTNGCAAAATGGGTTTCTCCTCTTTGGGATGCTGGATTCTTCACATTTTCTGGATATGTTTGTCCAAAAGAGGCCCTTGCAGCTGCCTCAGGAGANAACTGCAAGAAAGTGCAACTGATACTAAATGTGTCTGAGGGGCATCATTTTGAAGATATGTCAAAGATGATGCAATCTGAACAAATTGTTGCGTTTTGCTCACTCATTGCTTCAATTCAAAGATGTTATGGCCTCTGGAGATTACAAGAGGTTCTGAATCAATATAGATGGCCTGAATCATTGAAGTCTGAAATTATATATGGTGCTTCTTCTATTGGTTCATCAGTCAATTCAAAATTTCTTGCTGCTTTTTCGGCTGCTGCTGGGAAGAAATCATTGCAACATTTTGATTCAGAAGAGTCTGATCCTGAATGGGGCTGCTGGAATGCTAGTGAAGAATTGAAGAATCCTTCTGTTAAAATCATTTTCCCAACTATTGAAAGAGTGAAGAATGCTTATAATGGGATTTTGCCTTCAAGACGTATTCTTTGTTTCTCAGAGGTGATTCGTAGATGCTTCTGGTCTAGAAGGGATGCACCTTCCATTGGTTGGATATATTGTGGGTCTCATAATTTTAGTGCTGCTGCCTGGGGGAGACAAATTTCAAATCCGTTTGGAACAAAAACTGATGGAACTCAAAAAAGGGAACCTTCTGTAAATTCTGGGCTTCACATTTGCAATTATGAACTTGGGATTATATTTACCTTTCCTCCTACGGAAAACAATGATTGTCCTAAAGCTAAAAGCACAAAATTAAATGATATAATTCTGCCATTTGTTGTGCCTGCTCCTAAATATGAATCTGGAGATAGGCCAGCTACAATGCAGGCTATGAGGGAGGTGATGGCTGAACTTGCTGAGCGAGAGGAGGAGAAACTTGCTGAAGAAGAAATGATGGAAGAGATTCTTGAGGAAGAGGAAGAAATGGAAACAATCAATTATGTTGGAGANGAGAAGGAAGAAGAGAATGCATATGCTGACATACTCTGGAGTCAGGTTGATTCTTCCAAGAGCAGTTGA

Protein Sequence

>Glyur000252s00012670.1
MVDSDYNRKRPFPHDPPSPNKKPRTIVAASVVLNHFDVPLFSTTNDGAVSRCDSMRLHADQPYMIGRGPRDCDFVFRDRRVSKRHCQILFDASLRKLYILSGILLRSDSTAESRLVHEFRRRVXAASRGGSEGFPLLEASNGVFVNGVEIXNGTAVELTEGDRVSLVCGNENGSCGILNRIGFVVERIVLEGCDVDGGVEIDGLTSSGHSQSGKRSKRVFAVKANVSRCERVVGRARFLLDRCRDILLSDDPXSYIRHAVSDLQCGFKCGRSTELPQRVMENTGIANVQSSSXLLCDSKVIDLEPESDPFGQKGNLEVASTYKNPNSIPLDSIGKDDLPSHVNRQEEKHGSIFYPSPGTVRSSSALLCESKVMDLEAESDPFRREGNLGVACVNGIADKNPNSVLSDSIWKDDFPFDGNRQGKKHGGIFXPPPGKNFYLNRLEYMNHGSSGLHQSISLPELIHPIESVSRMFIATFTITIACHNAERCWSSRPDERVFVPYQDYPNLVVVYPPFPETIAFGGNNRKKQGIACHHPKLIXLQREDSIRVVITSANLNEKQWKGVTNTIWWQDFPHAISVDFASLFQKIDDGEIHRDAKCDFAAQLAGFMASLLIDVPSHAHWITQLTKYDFGGATGHLVASVPGIHFYRTSILSESFQSSPFLGSVVASVVGLSHLFRNVADSNGTRLKALAAFLGKSCKNAYGRLEILLKRNPNVPADENAVSILVPNPDQTPEGDYVQLGFLPRNVAKWVSPLWDAGFFTFSGYVCPKEALAAASGXNCKKVQLILNVSEGHHFEDMSKMMQSEQIVAFCSLIASIQRCYGLWRLQEVLNQYRWPESLKSEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNASEELKNPSVKIIFPTIERVKNAYNGILPSRRILCFSEVIRRCFWSRRDAPSIGWIYCGSHNFSAAAWGRQISNPFGTKTDGTQKREPSVNSGLHICNYELGIIFTFPPTENNDCPKAKSTKLNDIILPFVVPAPKYESGDRPATMQAMREVMAELAEREEEKLAEEEMMEEILEEEEEMETINYVGXEKEEENAYADILWSQVDSSKSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	129611	137660	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

GO:0008081 phosphoric diester hydrolase activity

GO:0008270 zinc ion binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012670.1	PF00498.21	FHA	63	166	4.30E-11
Glyur000252s00012670.1	PF06087.7	Tyr-DNA_phospho	528	645	3.20E-16
Glyur000252s00012670.1	PF08797.6	HIRAN	662	774	6.60E-17
Glyur000252s00012670.1	PF06087.7	Tyr-DNA_phospho	819	917	4.00E-06
Glyur000252s00012670.1	PF06087.7	Tyr-DNA_phospho	935	1025	1.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.439
SRR1783600	control	1.487
SRR1783602	moderate drought stress	1.500
SRR1811619	moderate drought stress	1.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.622
DRR006520	Root Summer glycyrrhizin high producing strain	1.541
DRR006521	Root Winter glycyrrhizin high producing strain	0.788
DRR006522	Root Winter glycyrrhizin high producing strain	0.758
DRR006523	Root Summer glycyrrhizin low producing strain	1.303
DRR006524	Root Summer glycyrrhizin low producing strain	1.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.433
SRR2868004	Drought Stress (root)	8.367
SRR2967015	Control (root)	7.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.015
SRR9715740	Leaf	1.751
SRR9715741	Leaf	1.729
SRR9715739	Root	0.201
SRR9715742	Root	2.224
SRR9715743	Root	2.151

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.069
SRR8749028	MeJA induced 9h	3.564
SRR8749029	MeJA induced 9h	1.011
SRR8749030	Uninduced	2.015
SRR8749031	Uninduced	0.855
SRR8749032	Uninduced	0.793

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.822
SRR8400027	Control - Root	4.237