Gene detail information of Glyur000252s00012668 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23570.1 | 1.00E-14 | XS domain-containing protein / XS zinc finger domain-containing protein-related |
| NR | XP_003525160.2 | 2.58E-54 | PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] |
| Swissprot | tr|A5YVF1|SGS3_SOLLC | 2.00E-19 | Protein SUPPRESSOR OF GENE SILENCING 3 |
| trEMBL | tr|I1K559|I1K559_SOYBN | 1.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G33260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 125035 | 126166 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.881 |
| SRR1783600 | control | 3.650 |
| SRR1783602 | moderate drought stress | 9.207 |
| SRR1811619 | moderate drought stress | 8.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.975 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.208 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.468 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.937 |
| SRR2868004 | Drought Stress (root) | 11.201 |
| SRR2967015 | Control (root) | 11.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.993 |
| SRR9715740 | Leaf | 3.576 |
| SRR9715741 | Leaf | 4.432 |
| SRR9715739 | Root | 0.592 |
| SRR9715742 | Root | 1.772 |
| SRR9715743 | Root | 1.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.843 |
| SRR8749028 | MeJA induced 9h | 4.791 |
| SRR8749029 | MeJA induced 9h | 2.395 |
| SRR8749030 | Uninduced | 3.459 |
| SRR8749031 | Uninduced | 1.938 |
| SRR8749032 | Uninduced | 1.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.965 |
| SRR8400027 | Control - Root | 14.520 |