Gene detail information of Glyur000252s00012667 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08480.2 | 1.00E-27 | VQ motif-containing protein |
| NR | XP_003525159.1 | 2.63E-64 | PREDICTED: uncharacterized protein LOC100807211 isoform X1 [Glycine max] |
| trEMBL | tr|K7KRB4|K7KRB4_SOYBN | 1.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G33250.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 119921 | 121819 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012667.1 | PF05678.9 | VQ | 21 | 46 | 4.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.132 |
| SRR1783600 | control | 2.151 |
| SRR1783602 | moderate drought stress | 5.917 |
| SRR1811619 | moderate drought stress | 5.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.040 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.402 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.251 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.574 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.131 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.181 |
| SRR2868004 | Drought Stress (root) | 7.326 |
| SRR2967015 | Control (root) | 6.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.584 |
| SRR9715740 | Leaf | 2.314 |
| SRR9715741 | Leaf | 3.950 |
| SRR9715739 | Root | 1.294 |
| SRR9715742 | Root | 1.460 |
| SRR9715743 | Root | 1.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.997 |
| SRR8749028 | MeJA induced 9h | 3.202 |
| SRR8749029 | MeJA induced 9h | 7.027 |
| SRR8749030 | Uninduced | 141.838 |
| SRR8749031 | Uninduced | 60.254 |
| SRR8749032 | Uninduced | 35.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.249 |
| SRR8400027 | Control - Root | 6.428 |