Gene detail

Gene detail information of Glyur000252s00012666

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35670.1	0	calcium-dependent protein kinase 2
NR	KHN17436.1	0	Calcium-dependent protein kinase SK5 [Glycine soja]
COG	YP_642814.1	5.00E-26	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|P28583\|CDPK_SOYBN	0	Calcium-dependent protein kinase SK5
trEMBL	tr\|I1K557\|I1K557_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G33240.1}

Sequence

Transcript Sequence

>Glyur000252s00012666.1
CATAAATATCCTTCAGTTGAAAGTTGAAACAGTACGAAGACCCAGCCCATAGATAGTTACAAAAGCGGTAACCGAAGGCAACATTTGTTGTTCCCGAACCATAAACCAAAAAACACGGTCACGGTGTTTCAGAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGTATAGGATTGCGAAGAACATGGCCAGTAACAGAACTTGGTCAGCTCACATATCTTACAATTACAATTACAATTACAATAGATAGATTCAACAACAACAACAACAACGTGCTAAGCAATAACATACAGAGAAGAGAATGGCGAAATCGAATTCGAGCACAACGGTAGTAACACTGAAACCGGCATGGGTACTACCGTACCGAACAGAGAGCATAACGGAGGTGTACAGTATGGGTAGGAAGCTGGGGCAGGGTCAATTCGGAACAACGTACCTATGCACGCACAAGGTTACGGGTGGAAGGTACGCGTGCAAGTCGATCCCGAAGAGGAAGCTGTTGTGTAAGGAAGACTACGAGGATGTGTGGAGGGAGATTCAGATAATGCACCACTTGTCTGGTCACCCTCACGTGGTTCGAATCGAGGGAACCTACGAGGACTCCTCTGCGGTTCACCTTGTCATGGAGCTCTGTGAAGGTGGTGAGCTCTTTGATAGGATCGTTCAGAAGGGTCATTACAGCGAGAGACAGGCTGCGAATCTCATCAAGACCATTGTTGAGGTTGTTGAGTCTTGTCACTCCCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAACTTCCTCTTTGACACCGTTCACGAGGATGCCAAGCTCAAAACCACCGATTTTGGTTTGTCTGTTTTCTACAAGCCCGGTGAATCCTTTTCCGATGTTGTCGGTAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCACTATGGACCTGAATCAGACGTGTGGAGTGCCGGGGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAAAGTGAACCGGGGATCTTCCGACAGATTTTACTAGGGAAACTTGATTTTCAGTCCGAGCCTTGGCCTAGCATTTCAGACAGCGCCAAGGATCTAATTCATAAAATGCTCGATCAAAATCCAAAAACTAGGCTTACAGCGCATGAAGTACTCCGCCACCCATGGATTGTTGATGACANCATTGCACCTGATAAACCTCTAGATTCTGCAGTTTTATCACGTCTGAAGCANTTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTCAAGATACCTGGGTGTCTCACATGGCTGTAGGGGATTTCTTGGTTTGGCTATCTGAGGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAACAGTGGAACCATAACTTTTGATGAATTAAAAGATGGCCTGCGGCGAGTAGGATCTGAACTCATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATAGATAAAAGTGGGACAATTGACTATGGTGAATTCATTGCTGCTACTGTTCATTTAAATAAGCTGGAGAGAGAGGAAAACCTGTTGTCAGCCTTCTCCTATTTTGACAAAGATGGCAGTGGTTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGATGATGTCCATATTGATGAAATGATCAAGGAAATTGATCAAGACAATGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATAGGAAGGAGAACTATGAGAAAAACACTAAATTTGAGAGATGCTCTGGGAATAGTAGGCAATGGTTCCAATCAAGTTATTGATGATTACCTTAAACCCATCATTCCAAAAAAGATTTTCACCTTGATCCTTGATGTGGTCATGTGGGTAGAGCAGGCTTGGTGCATTATTTGCTCAGATGATTCATTGCATGAAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	113646	118430	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012666.1	PF00069.20	Pkinase	30	288	1.20E-73
Glyur000252s00012666.1	PF13499.1	EF-hand_7	347	406	5.80E-13
Glyur000252s00012666.1	PF13499.1	EF-hand_7	419	477	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.861
SRR1783600	control	20.320
SRR1783602	moderate drought stress	16.002
SRR1811619	moderate drought stress	16.696

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.992
DRR006520	Root Summer glycyrrhizin high producing strain	28.345
DRR006521	Root Winter glycyrrhizin high producing strain	34.591
DRR006522	Root Winter glycyrrhizin high producing strain	33.757
DRR006523	Root Summer glycyrrhizin low producing strain	30.496
DRR006524	Root Summer glycyrrhizin low producing strain	30.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.546
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.718

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.022
SRR2868004	Drought Stress (root)	56.836
SRR2967015	Control (root)	53.324

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.073
SRR9715740	Leaf	30.294
SRR9715741	Leaf	24.994
SRR9715739	Root	2.346
SRR9715742	Root	13.681
SRR9715743	Root	10.495

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	101.559
SRR8749028	MeJA induced 9h	81.233
SRR8749029	MeJA induced 9h	102.865
SRR8749030	Uninduced	210.274
SRR8749031	Uninduced	185.128
SRR8749032	Uninduced	133.217

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.830
SRR8400027	Control - Root	33.475