Gene detail information of Glyur000252s00012660 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09160.1 | 2.00E-118 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| NR | XP_003532213.1 | 0 | PREDICTED: patellin-3-like [Glycine max] |
| Swissprot | tr|Q56Z59|PATL3_ARATH | 8.00E-152 | Patellin-3 |
| trEMBL | tr|I1KP02|I1KP02_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G00780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 66159 | 70169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012660.1 | PF03765.10 | CRAL_TRIO_N | 259 | 295 | 3.10E-09 |
| Glyur000252s00012660.1 | PF00650.15 | CRAL_TRIO | 320 | 423 | 1.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.545 |
| SRR1783600 | control | 107.460 |
| SRR1783602 | moderate drought stress | 43.999 |
| SRR1811619 | moderate drought stress | 43.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 88.482 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 87.372 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.733 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.952 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.483 |
| SRR2868004 | Drought Stress (root) | 57.346 |
| SRR2967015 | Control (root) | 69.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.013 |
| SRR9715740 | Leaf | 1.520 |
| SRR9715741 | Leaf | 2.536 |
| SRR9715739 | Root | 16.950 |
| SRR9715742 | Root | 35.098 |
| SRR9715743 | Root | 29.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.095 |
| SRR8749028 | MeJA induced 9h | 7.492 |
| SRR8749029 | MeJA induced 9h | 24.944 |
| SRR8749030 | Uninduced | 0.280 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 124.504 |
| SRR8400027 | Control - Root | 165.928 |