Gene detail

Gene detail information of Glyur000252s00012659.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10940.1	2.00E-164	Protein kinase superfamily protein
NR	AET04893.2	0	sucrose non-fermenting-like kinase 2 family protein [Medicago truncatula]
COG	NP_109936.1	9.00E-24	Ser/Thr/Tyr protein kinase [Mycoplasma pneumoniae M129]
Swissprot	tr\|Q7XQP4\|SAPK7_ORYSJ	0	Serine/threonine-protein kinase SAPK7
trEMBL	tr\|G7LGG5\|G7LGG5_MEDTR	0	Sucrose non-fermenting-like kinase 2 family protein {ECO:0000313\|EMBL:AET04893.2}

Sequence

Transcript Sequence

>Glyur000252s00012659.2
CTCCCCTACAGCAACGGCGTTGTTAGAGATCCAATAATACCATATACTGCTACTATAAGTATACCAATTCCAATTCAGAGTTGCAGAACTCAAAAGCTGATAAAAAAACATTAATACAAAATATAACAGCAAATTAAAGCCACCCAAGAAGAAAGTGAATAACTGGATTCAAGCTGGTCTTCATCTTCCCCATGGTCATTTAATTGGATCTCCACACCATACCACACCATTCCATTTTTTTAAATGCTCTCTCTCCCACACTCCCACGTGCACTCTCCTTCTCTTCCTCCTCACTCCCCCCACTCTACAATGAAATTCTAAACAAATCTTCATTTTCACCTCTTCTCTCTCTCTGTCCCATTATTATTATTATATTTATTCTTATATATATATGGAGAAAGAACCATTTTTTCAGTGAAAGCAACCTCCTTTACACTACCCTTTTGATCAGAGTGCAAAATGGTGCTGTGATTCCACAAGGGACTTGCATGCCCATCTGAGTTTGAGTTGAAGTTTGAACCCCCCCCCCCTTTTTTTTTCATCCATAAAAACCGTAACTGGTAGTGTCGTTCGTTGTTCGAGATGGAAAAGTACGAGGTCGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCTTGAGGAACAAGGAGACCAAGGAGCTCGTTGCCATGAAATACATCGAGCGTGGCCATAAGGTGGTTTTAACCCCCACCCATTTAGCAATAGTGATGGAGTATGCAGCTGGAGGAGAACTCTTTGAGAGGATATGTAATGCTGGCCGGTTCAGTGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGTGTCCATTACTGTCATGCCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTCTGGATGGAAGCCCTGCACCCCGCTTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCCGTTCAATACAAAATTCCTGATTATGTTCACATATCTCAAGATTGCAAACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATTTCTCTCAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTGTGTATTACCAGAGAGGTGGCAACCCAAGCTTTTCTGTTCAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGAGGCAAGAGATCCTCCTCCAATATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGAAGAAGAAGATGAAGGGCTTGAAGAAGAGGTGGAGGAGGAAGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCAAATCAGTTAAGCAGTGTAATTCTTGTGTACTTGTTAAAAGTATTTATTTTTTTGTATGCTAGAAGTCACCTATTTATGTGTACTGTAATTTATAACTACTACTATGAACAAATGAGGTAGTCTGACTTATGGCACTGTTCACGTAATGTACTCTACCAGTATCACCATATGGAAGCCGTGTCTGAGAACACTAGTTGTATAATAACTTCTTTAAATTTACCCGTCCCTGTCATGGCCAGGATAGTTAAGCTCAAAAAGCCTTTTATTATACTTAGACTAGATGAAGGAATGGCCACACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	54987	59127	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14498	SNRK2	EC:2.7.11.1	MAPK signaling pathway - plant	map04016
			MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012659.2	PF00069.20	Pkinase	41	235	1.20E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.475
SRR1783600	control	25.597
SRR1783602	moderate drought stress	18.600
SRR1811619	moderate drought stress	18.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.098
DRR006520	Root Summer glycyrrhizin high producing strain	26.902
DRR006521	Root Winter glycyrrhizin high producing strain	5.503
DRR006522	Root Winter glycyrrhizin high producing strain	5.443
DRR006523	Root Summer glycyrrhizin low producing strain	39.513
DRR006524	Root Summer glycyrrhizin low producing strain	40.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.452

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.132
SRR2868004	Drought Stress (root)	51.199
SRR2967015	Control (root)	44.507

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	79.837
SRR9715740	Leaf	43.038
SRR9715741	Leaf	71.469
SRR9715739	Root	22.346
SRR9715742	Root	38.198
SRR9715743	Root	31.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.511
SRR8749028	MeJA induced 9h	60.863
SRR8749029	MeJA induced 9h	61.194
SRR8749030	Uninduced	69.798
SRR8749031	Uninduced	14.190
SRR8749032	Uninduced	14.770

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.082
SRR8400027	Control - Root	34.235