Gene detail

Gene detail information of Glyur000252s00012657.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30390.1	6.00E-38	ferrochelatase 2
NR	XP_003630416.1	2.08E-110	Ferrochelatase [Medicago truncatula]
COG	YP_007082074.1	3.00E-29	ferrochelatase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|A2Y3Q5\|HEMH_ORYSI	7.00E-48	Ferrochelatase-2, chloroplastic (Precursor)
trEMBL	tr\|G7LGG4\|G7LGG4_MEDTR	8.00E-111	Ferrochelatase {ECO:0000256\|RuleBase:RU000607}

Sequence

Transcript Sequence

>Glyur000252s00012657.2
ATGGATCTCTTTGAAGAAGCTGAAGAGTTAAGGAAATCTCTTTGGACAAAGAATGTCCCAGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAGCAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCAACCAGTGGATCAAGTCTGCGTCTCTTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCATACAGTAATACCTTCCTGGTACCAACGTGAAGGATACATAAAGGCCATGGCAAATCTAATTGAAAAAGAGCTAAAAACTTTTGACTGCCCAGAAAAGGTCATGATATTCTTTAGTGCACATGGGGTGCCACTTGCTTATGTGGAAGAGGCTGGTGATCCATACAAAGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGAAAAGAAAGATAACTAATGCATACACACTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGGAAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTTTAAGCTCTGGTATAGAAAAATGGGGCCGCGTTCCTGCTCTGGGATGTGAACCNACCTTCATTTCAGATTTGGCAGATGCTGTAATCGAGAGTCTCCCATATGTTGGTGCAATGGCAGTTTCAAACCTCGAAGCTCGACAGTCTTTGGTTCCCCTGGGAAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCACCGCCAGTTCTGGTGTGGGAATGGGGATGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGATTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAGGGATTTTTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGAATGTGGCAATGGAGTTTAGTTTTGCTTGTATATGTATACCATTAGCATCCATCACATATTATGCCCTCTTAAAATCGAAGGCATGCATGCACTCGGGAGTTCTAAAATCTAGTTTAGTAGACACAGCATTTTGTGGCTGGAAAGAGAAAGATAATGTATAGTGATTTCCTCTTGTATGTATTTTCTAAAGCATTTTTGCTTGGGTTTTCATGACTCGTGATAGGTGGTGTTGTTGTAGCTGAGAAGGCAGTTATTGATAAGAACTTCCTTGTGAAGTTATGAGAGACTTTGTCAGTTGCACTACTATGTTTGTCGACAAAATAAAAGAGATTTTGAAAAGGGTGCAGAATTTGCTGTCCATCTTGTTTGCTTCACTCTGGCTTGACAACTAGAAGAGTATTGGTCCATNCGTGTTATGCACAGAATAATCGGATTTCTGTGACAATTTGCACTCGGAAGGATGCATATAAGCAATTGTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	39876	46514	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01772	hemH, FECH	EC:4.99.1.1 4.99.1.9	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0006783 heme biosynthetic process

molecular_function
GO:0004325 ferrochelatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012657.2	PF00762.14	Ferrochelatase	7	253	1.90E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.499
SRR1783600	control	22.621
SRR1783602	moderate drought stress	30.084
SRR1811619	moderate drought stress	30.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.735
DRR006520	Root Summer glycyrrhizin high producing strain	28.389
DRR006521	Root Winter glycyrrhizin high producing strain	11.547
DRR006522	Root Winter glycyrrhizin high producing strain	11.166
DRR006523	Root Summer glycyrrhizin low producing strain	15.068
DRR006524	Root Summer glycyrrhizin low producing strain	15.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.372
DRR006526	Leaf Summer glycyrrhizin high producing strain	72.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.832
SRR2868004	Drought Stress (root)	23.414
SRR2967015	Control (root)	24.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.006
SRR9715740	Leaf	88.080
SRR9715741	Leaf	67.724
SRR9715739	Root	12.225
SRR9715742	Root	18.724
SRR9715743	Root	18.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.046
SRR8749028	MeJA induced 9h	6.451
SRR8749029	MeJA induced 9h	4.685
SRR8749030	Uninduced	0.907
SRR8749031	Uninduced	0.555
SRR8749032	Uninduced	1.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.286
SRR8400027	Control - Root	24.223