Gene detail information of Glyur000252s00012656 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63640.1 | 8.00E-108 | ENTH/VHS/GAT family protein |
| NR | XP_003630411.1 | 0 | Vacuolar protein-sorting machinery protein [Medicago truncatula] |
| trEMBL | tr|V7AWY1|V7AWY1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 33905 | 38926 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012656.1 | PF00790.14 | VHS | 41 | 147 | 7.20E-21 |
| Glyur000252s00012656.1 | PF03127.9 | GAT | 221 | 301 | 6.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.107 |
| SRR1783600 | control | 10.084 |
| SRR1783602 | moderate drought stress | 15.646 |
| SRR1811619 | moderate drought stress | 15.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.451 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.023 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.602 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.169 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.222 |
| SRR2868004 | Drought Stress (root) | 28.546 |
| SRR2967015 | Control (root) | 29.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.852 |
| SRR9715740 | Leaf | 8.852 |
| SRR9715741 | Leaf | 9.107 |
| SRR9715739 | Root | 0.602 |
| SRR9715742 | Root | 4.168 |
| SRR9715743 | Root | 3.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.378 |
| SRR8749028 | MeJA induced 9h | 13.382 |
| SRR8749029 | MeJA induced 9h | 5.995 |
| SRR8749030 | Uninduced | 19.909 |
| SRR8749031 | Uninduced | 4.801 |
| SRR8749032 | Uninduced | 8.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.132 |
| SRR8400027 | Control - Root | 12.605 |