Gene detail information of Glyur000252s00012655 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63620.1 | 0 | GroES-like zinc-binding alcohol dehydrogenase family protein |
| NR | XP_003532189.1 | 0 | PREDICTED: alcohol dehydrogenase 1B isoform X1 [Glycine max] |
| COG | YP_003696424.1 | 6.00E-134 | alcohol dehydrogenase zinc-binding domain protein [Arcanobacterium haemolyticum DSM 20595] |
| Swissprot | tr|P48977|ADH_MALDO | 2.00E-48 | Alcohol dehydrogenase |
| trEMBL | tr|I1K548|I1K548_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G33140.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 27318 | 31948 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012655.1 | PF08240.7 | ADH_N | 89 | 220 | 6.70E-29 |
| Glyur000252s00012655.1 | PF00107.21 | ADH_zinc_N | 264 | 394 | 8.10E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.717 |
| SRR1783600 | control | 19.879 |
| SRR1783602 | moderate drought stress | 19.264 |
| SRR1811619 | moderate drought stress | 19.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.692 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.692 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.974 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.435 |
| SRR2868004 | Drought Stress (root) | 150.477 |
| SRR2967015 | Control (root) | 209.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.205 |
| SRR9715740 | Leaf | 35.411 |
| SRR9715741 | Leaf | 46.520 |
| SRR9715739 | Root | 36.656 |
| SRR9715742 | Root | 39.828 |
| SRR9715743 | Root | 39.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.439 |
| SRR8749028 | MeJA induced 9h | 35.851 |
| SRR8749029 | MeJA induced 9h | 25.893 |
| SRR8749030 | Uninduced | 24.069 |
| SRR8749031 | Uninduced | 58.842 |
| SRR8749032 | Uninduced | 46.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.184 |
| SRR8400027 | Control - Root | 74.377 |