Gene detail information of Glyur000251s00019383 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05785.2 | 4.00E-31 | Got1/Sft2-like vescicle transport protein family |
| NR | XP_006603070.1 | 1.58E-71 | PREDICTED: vesicle transport protein GOT1B-like isoform X1 [Glycine max] |
| trEMBL | tr|I1N5E7|I1N5E7_SOYBN | 6.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00251 | 152785 | 156614 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000251s00019383.1 | PF04178.7 | Got1 | 10 | 118 | 3.40E-15 |
| Glyur000251s00019383.2 | PF04178.7 | Got1 | 10 | 118 | 3.40E-15 |
| Glyur000251s00019383.3 | PF04178.7 | Got1 | 10 | 118 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.018 |
| SRR1783600 | control | 13.786 |
| SRR1783602 | moderate drought stress | 10.187 |
| SRR1811619 | moderate drought stress | 10.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.154 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.611 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.299 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.456 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.972 |
| SRR2868004 | Drought Stress (root) | 39.613 |
| SRR2967015 | Control (root) | 39.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.238 |
| SRR9715740 | Leaf | 17.873 |
| SRR9715741 | Leaf | 17.182 |
| SRR9715739 | Root | 18.370 |
| SRR9715742 | Root | 16.490 |
| SRR9715743 | Root | 19.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.730 |
| SRR8749028 | MeJA induced 9h | 33.226 |
| SRR8749029 | MeJA induced 9h | 29.378 |
| SRR8749030 | Uninduced | 23.075 |
| SRR8749031 | Uninduced | 15.090 |
| SRR8749032 | Uninduced | 16.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.808 |
| SRR8400027 | Control - Root | 41.563 |