Gene detail

Gene detail information of Glyur000251s00019379

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43180.4	2.00E-112	Phosphoenolpyruvate carboxylase family protein
NR	ACU21405.1	2.44E-162	unknown [Glycine max]
COG	YP_008147286.1	4.00E-91	carboxyvinyl-carboxyphosphonate phosphorylmutase [Sorangium cellulosum So0157-2]
Swissprot	tr\|O49290\|CPPM_ARATH	2.00E-50	Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic (Precursor)
trEMBL	tr\|I1KZI5\|I1KZI5_SOYBN	2.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G47730.2}

Sequence

Transcript Sequence

>Glyur000251s00019379.1
ATGGGAACAACAAGAGAGGAACCGGCGAAGGTGCTTCGGCGAATCATGGAGTCCCCAGGTGTTCACCAAGGCCCCGCCTGTTTCGACGCTCTCAGCGCCAAGCTCATCCAATCCGCCGGCTTCCCTTACTGCATCACCAGCGGCTTCTCCATCTCCGCCGCCAGATTGGGCCTCCCCGACGCCGGACTCATCTCCTACGGCGAAATGGTCGACCAAGGCCGCCTCATCACTCAGTCCCTCTCCATCCCCGTCATCGGCGACGCCGACAACGGTTACGGTAACGCCATGAACGTGTCTCCGAAAGCGTGTGGGCACACGCGCGGGAGGAAGGTGGTGTCTCGAGAGGAGGCGGTTATGCGGATCAGAGCGGCCGTCGACGCCAGGGCTGAGAGTGGGTCTGATATTGTGATTGTGGCTCGCTCCGATGCTCGCCAGGCGGTGTCGTTGGAGGAGGCACTGGTGAGGTCGAAGGCATTTGCGGATGCTGGGGCTGATGTTCTCTTTATAGATGCACTTGCCTCCATAGAAGAGATGAAAGCTTTCTGTCAAGTTGCTCCCCNTGTTCCTAAACTGGCCAATATGCTTGAAGGAGGAGGGAAAACACCAATACTGAATCCCCAGGAACTTGAACAAGTTGGCTATAAGCTTGTTGTTTATCCCCTTTCCTTGATTGGGGTTTCTATTCGAGCAATGCAGGATGCACTCACTGCCATTAAGGGAGGCAATATTCCTCCTCCAGGAAGCATGCCATCTTTTGAAGAAGTTAAGGATATTGTGGGCTTCAACGCTTATTATGAAGAAGAGGAGCGCTATGCTACAAGCTCCACTCAGCAGACTTAAAAGAGAGAGGTTTTTCTTCAAAATTAAGAAGTAGGAGTAAATAACAACCCTTTCACAGAGGGGCATTGTAGTATGATGGCAGGGTGCTTCTGAGAGTTAAGAGTTGTATGTACTCTATTCTAGACCTGCTTTTATCTTTTCAAGCACTGAATTGAATATCAAGCTAAATATCTGATCTGATCAGTATTTCAATCAATAAAATCCATCTAACAATAAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00251	118433	120535	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000251s00019379.1	PF13714.1	PEP_mutase	21	238	1.70E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.354
SRR1783600	control	56.303
SRR1783602	moderate drought stress	44.676
SRR1811619	moderate drought stress	45.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.740
DRR006520	Root Summer glycyrrhizin high producing strain	60.489
DRR006521	Root Winter glycyrrhizin high producing strain	7.790
DRR006522	Root Winter glycyrrhizin high producing strain	8.285
DRR006523	Root Summer glycyrrhizin low producing strain	50.517
DRR006524	Root Summer glycyrrhizin low producing strain	52.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	116.635
DRR006526	Leaf Summer glycyrrhizin high producing strain	118.847

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	102.522
SRR2868004	Drought Stress (root)	64.768
SRR2967015	Control (root)	67.911

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	151.028
SRR9715740	Leaf	109.960
SRR9715741	Leaf	129.194
SRR9715739	Root	112.822
SRR9715742	Root	121.848
SRR9715743	Root	111.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.344
SRR8749028	MeJA induced 9h	22.777
SRR8749029	MeJA induced 9h	28.519
SRR8749030	Uninduced	3.790
SRR8749031	Uninduced	2.752
SRR8749032	Uninduced	11.495

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	120.214
SRR8400027	Control - Root	132.354