Gene detail

Gene detail information of Glyur000251s00019378.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67440.1	4.00E-08	Minichromosome maintenance (MCM2/3/5) family protein
NR	ACJ85084.1	4.21E-16	unknown [Medicago truncatula]
COG	YP_007103543.1	2.00E-09	ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367]
trEMBL	tr\|B7FK05\|B7FK05_MEDTR	2.00E-16	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ85084.1}

Sequence

Transcript Sequence

>Glyur000251s00019378.1
ATAAGGAAAATTCTCGATGCGAATGAGTGTGCATTTAACAATTGTTTACTCATTAGTGAACCTGGCTGCACTGTGAAGGGAAATTGGGAAAGATATCAATTTCATGCTAAACTTCTTCAAATAAAAATCAAGGAGAAGTTGAAGTTAAGATCACCGGGAAATAAAAAAGCAACTGCTGTAAGGGCATATGCGCGACAACAACCACGTTTGAAACGTTTAAAAGTATATGAGAAAATCTCGCAAAAGTATTAATCAGTCAATTTACCAAATAGATGACGACGACGAGGAGAACGATGATTTTGACGATTGAATTGTTCAATTTATTAGAATTAGTTATAACTATCATTAGGATAAGTTTGTTAATCTGTTAGGTTAGCTTAGTTTGTTCTGTTTTGCTCTCAGCCTCTACCTATATATAGAGTTGTGTTAATCTGTTTGATTCCTGAATTATACGATAGATTGGAAATGCATGTGATGAGAAATTTGAAGATATTGACATTTTTTGGAAAATTACAGAAATATGTGAATTAAGGCCAGTTTTGTTAGTTAGCAAGAAGCAACTATTCTATTGCATATTTTCTGATTTCTTCTTTGTTGTATACTATTTACAATTGTATTTATATTGTGCCTCTTTGCCATACTCACTAACTTCTCTATTTATGTTATTTTATACTTAATGCTCTTTATAGGACTTGCTAGATGGATATTCTTAGACATTGGATTCATTCACTGAGGCGTTTATCTCCAAGTTGACATCAGTTGCTGGTGAGATCTATGGTTTGAAAAGCATAGCTGCATACTACTTTGGCCTAGTAATCAATACATGTGTGNCTGAGGAGGGTCTGAAACAGGTGCTGGAAAGCCTGTCTGTATTGCAAACAAAAACCTTGTTGACTACATCTTCTTGCTAAGCTTGGAATTTGCTCAATCCCATGACTTGCCAATGCAGATACACACAGGGTAATGGATGGTCTTAAATTGTCTGACACTTTTACATATATTGATGTGTGAATTTTGGAGGACTCTTCTAAATTTGCTTTGTATTTGCAGCTCCTCCAGGACTGCAATCCAAGAAGCACACATTTCGATATGTTCATTTAGATGCTGCTCTTGTTCACGTCTTATCATTTTTTTGAGGATTTTATTTTATCATTTGGAAATTAATAGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00251	111139	112587	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06949	rsgA, engC	EC:3.6.1.- 3.1.3.100	Thiamine metabolism	map00730

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000251s00019378.1	PF03193.11	DUF258	7	38	9.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.059
SRR1811619	moderate drought stress	0.059

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.346
DRR006520	Root Summer glycyrrhizin high producing strain	11.861
DRR006521	Root Winter glycyrrhizin high producing strain	3.844
DRR006522	Root Winter glycyrrhizin high producing strain	3.079
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.091
SRR2868004	Drought Stress (root)	0.236
SRR2967015	Control (root)	0.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.942
SRR9715740	Leaf	4.065
SRR9715741	Leaf	9.647
SRR9715739	Root	2.006
SRR9715742	Root	5.470
SRR9715743	Root	6.442

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.077
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.313
SRR8400027	Control - Root	12.105