Gene detail information of Glyur000251s00019373 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79050.2 | 5.00E-13 | recA DNA recombination family protein |
| NR | BAJ98339.1 | 2.33E-20 | predicted protein [Hordeum vulgare subsp. vulgare] |
| COG | YP_005269624.1 | 1.00E-09 | recombinase A [Acetobacterium woodii DSM 1030] |
| Swissprot | tr|Q39199|RECAC_ARATH | 8.00E-15 | DNA repair protein recA homolog 1, chloroplastic (Precursor) |
| trEMBL | tr|F2DTB8|F2DTB8_HORVD | 9.00E-21 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_10667.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00251 | 65287 | 68998 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000251s00019373.1 | PF00154.16 | RecA | 7 | 55 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.870 |
| SRR1783600 | control | 0.647 |
| SRR1783602 | moderate drought stress | 2.720 |
| SRR1811619 | moderate drought stress | 2.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.585 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.273 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.438 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.361 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.531 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.338 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.498 |
| SRR2868004 | Drought Stress (root) | 5.305 |
| SRR2967015 | Control (root) | 6.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.560 |
| SRR9715740 | Leaf | 0.275 |
| SRR9715741 | Leaf | 0.373 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.086 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.147 |
| SRR8749028 | MeJA induced 9h | 15.415 |
| SRR8749029 | MeJA induced 9h | 12.575 |
| SRR8749030 | Uninduced | 9.226 |
| SRR8749031 | Uninduced | 4.616 |
| SRR8749032 | Uninduced | 2.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.769 |
| SRR8400027 | Control - Root | 3.625 |