Gene detail information of Glyur000251s00019372 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79050.1 | 9.00E-08 | recA DNA recombination family protein |
| NR | XP_006836393.1 | 5.78E-07 | hypothetical protein AMTR_s00092p00136000 [Amborella trichopoda] |
| Swissprot | tr|Q39199|RECAC_ARATH | 2.00E-08 | DNA repair protein recA homolog 1, chloroplastic (Precursor) |
| trEMBL | tr|W1NQP0|W1NQP0_AMBTC | 2.00E-07 | Uncharacterized protein {ECO:0000313|EMBL:ERM99246.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00251 | 61027 | 64415 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.461 |
| SRR1783600 | control | 2.016 |
| SRR1783602 | moderate drought stress | 5.403 |
| SRR1811619 | moderate drought stress | 4.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.786 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.230 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.092 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.591 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.262 |
| SRR2868004 | Drought Stress (root) | 3.329 |
| SRR2967015 | Control (root) | 4.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.557 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.099 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.105 |
| SRR9715743 | Root | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.370 |
| SRR8749028 | MeJA induced 9h | 13.525 |
| SRR8749029 | MeJA induced 9h | 6.108 |
| SRR8749030 | Uninduced | 4.999 |
| SRR8749031 | Uninduced | 2.495 |
| SRR8749032 | Uninduced | 1.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.004 |
| SRR8400027 | Control - Root | 2.577 |