Gene detail

Gene detail information of Glyur000251s00019371

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43200.1	2.00E-171	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003551858.1	0	PREDICTED: probable methyltransferase PMT19-like [Glycine max]
Swissprot	tr\|Q9ZW75\|PMTJ_ARATH	0	Probable methyltransferase PMT19
trEMBL	tr\|I1N5F1\|I1N5F1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53780.1}

Sequence

Transcript Sequence

>Glyur000251s00019371.1
CACTCACACTCACACACACAACACAAGATAAACAGAACAGAAACAGAGGATGATACTCCTACTGCTCTAGTCTATTTCTTCCATTATCCATAGATACCACCGGTGGTGAAGTTAACAACAACACCACCATGGCCCCTCAACACCTCACCTTTGTCAACACCTTATTCATCCTCAGCCTCTTCTCTCTCCTCTACCTCATTTCTTCACCCTCCTTCTTCACCTCACCCACCCTCCACCTTCAACACTTAGAATCCTCATCCCCATCAACAACAACAACAACAACAAAATCCAATTTTGAGCTGTGCCCAAGTAACTACACCAACTACTGTCCATGTGAAGACCCCAAAAGGCAGAAACTATTCCCCAATAGAAAATGGTTCCGCAAAGAGCGTCACTGTCCAAAGAGCAACGAGAGGTTGAGGTGCCTTATACCTATGCCAGTGGGTTACCAAAAGCCTTTTNCTTGGCCACAGAGCAAGGACAGTGCATGGCTTAATAATGTTCCTTTCACCAAGCTTGTGGAATATAAGAAGTCACAGAATTGGGTTAGATTGGAAGGTGACCGTTTCGTGTTCCCCGGAGGTGGCACTTCGTTTCCTGAAGGAGTGAAGGGTTATGTTGATGCTCTGAATCGTCTTCTTCCTGTGCCTTTGGNATCTGGGCACATCAGAACAGCTCTTGATGTTGGTTGTGGTGTTGCAAGCTTTGGNGCATCTCTGATGGACTATGATATATTGACAATGTCAATTGCACCAAGTGATGAACACGANGCTCAAGTCCTGTTTGCCCTTGAGAGGGGACTCCCTGCCATGCTTGGAGTGCTTAGCACTCATAGGTTAACATTCCCTTCCAGATCATTCGATATGGCTCATTGCTCCAGATGCCTTGTCCCTTGGACCGCTTATGATGGGTTGTATCTAAGAGAGATTGACCGGATTCTGCGTCCGGGTGGATTTTGGGTACTGTCTGGGCCACCCATCAATTGGAGGGTAAACTACAAGGCGTGGCAAACAGAGCCAAATGTGTTGGAAAAGGAGCAGAACATTCTAGAAGACCTTGCAATGCAACTGTGCTGGGAGAAAGTTGCTGAGGGAGAACAGATTGCTATCTGGCAAAAACCCATTAACCATATCAGCTGCATACAAAAGTATACCAAAATGACTGCATGCATTTTTCCTCTTCCAGAGGTGAAAGATATCCATGAAATATCTGGTGGTGTTCTTGAGAAATGGCCTATGAGGTTGAACACTGCTCCACCAAGGNTACTGAGAAATAAAAATGATGAAGGCTTCACACTCAAGAACTATAATGAAGATAATCTGGCATGGGAAAGGAGAGTATCCTATTATGGGGTTATGCTCAAGTCCCTCTCTTCTGGTAAACATTATAGGAATGTTATGGATATGAATGCTGGTTTTGGTGGATTCGCAGCTGCAATGATGAAATATCCTGTTTGGGTTATGAATGTTGTTCCCTTTGATGCAAAAAGCAACAATCTTGGTATCATCTATGAACGAGGCCTTATAGGAACTTACATGGATTGGTGTGAGCCCTTTTCAACGTACCCACGAACATATGACTTGATACATGCTTGTGGTCTATTCAGTATGTATATGGACAAGTGTGACATTACTGACATTGTGGTTGAGATGCATAGGATTCTTCGTCCCAAAGGAGCTGTTATTATTAGAGACCAGAGAGATGTAGTTCTCAGAGTTAAAGAAATAACGGATCGAATAGGATGGAAAGGAGTACTTGTAGGCGGCAATAATCAGAGTCATATTGAGAGTGGACCTAATATTTTTAACCCGGAATTGATTATGGTTTTTGACAATACCGAGTAATTAAATTGATTACTTTATACATCATTAATTATCAATGTTAGCTCTCTTAATTACCAGCAGATCAAGCTAGCTAGCTTTTGTTTGTTTCCNAAATCATAAGTCTAGCTTTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00251	52793	57485	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000251s00019371.1	PF03141.11	Methyltransf_29	65	551	1.70E-192

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.133
SRR1783600	control	0.150
SRR1783602	moderate drought stress	0.491
SRR1811619	moderate drought stress	0.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.733
DRR006520	Root Summer glycyrrhizin high producing strain	0.686
DRR006521	Root Winter glycyrrhizin high producing strain	0.113
DRR006522	Root Winter glycyrrhizin high producing strain	0.111
DRR006523	Root Summer glycyrrhizin low producing strain	1.756
DRR006524	Root Summer glycyrrhizin low producing strain	1.788
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.444
SRR2868004	Drought Stress (root)	0.415
SRR2967015	Control (root)	0.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.166
SRR9715740	Leaf	21.500
SRR9715741	Leaf	8.846
SRR9715739	Root	0.000
SRR9715742	Root	0.123
SRR9715743	Root	0.389

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.032
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.429
SRR8400027	Control - Root	0.392