Gene detail

Gene detail information of Glyur000250s00014126

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49810.1	0	methionine S-methyltransferase
NR	XP_004485406.1	0	PREDICTED: methionine S-methyltransferase-like isoform X2 [Cicer arietinum]
COG	YP_005367739.1	2.00E-71	putative S-adenosyl-L-methionine: L-methionine S-methyltransferase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9LTB2\|MMT1_ARATH	0	Methionine S-methyltransferase
trEMBL	tr\|G7IL50\|G7IL50_MEDTR	0	Methionine S-methyltransferase {ECO:0000313\|EMBL:AES63119.1}

Sequence

Transcript Sequence

>Glyur000250s00014126.1
GAAAGGGTCGTAGCCTCAAATGTGGTGCTTAGTCAGTCTCACACATCACAGCCCTGANCCCTCCCACACATCTATTCATCTAACTAACTGATTGCTTACCTCTTCTCTTCTGACCTGTCATTCTCACAGCGCAGCGGCATTGCGACGAAACCTCAAGTGAAGCAAAATGACGCCGACGGTGGATGAGTTCCTTCAGCAGTGCAAGCAGTCCGGCGACGCTGCCTACGCCACCTTTCGATCCCTGCTGGAGCGCCTTGACCATCCCGAAACCCGTTCCCAGGCTCGGATCTTCCTTTCCCANCTTCAGAAGCGTTTTCCCTCCAAGGACTCCTGCGATCAATGCTTCCAAACCTACCATTTTCGTATCGAAGACATCTTATTGGATCAATTCGAGGGCTACCATGGGAGAAGTAAATTGACTATGATGGTCATTCCTAGCATTTTTCTCCCTGAAGACTGGTCCTTTACTTTTTACGAAGGGATTAATAGACATACAGACTCCATTTTCAAGGACAGGACTGTTGCTGAGTTAGGTTGTGGAAATGGATGGATATCCATTGCCATAGCTGAGAAGTGGTTGCCTTCCAAGGTCTATGGCCTTGATATCAACCCTAGAGCGGTAAAAGTTTCCTGGATAAACCTATACTTAAACGCTTTAGATGAAAATGGCCANCCCATCTATGATGAGGAGAAGAAAACTTTGCTGGACAGGGTAGAGTTCCATGAATCTGATCTTCTATCCTATTGCAGAGAAAATGAAATTCAACTTGAAAGAATTGTAGGATGCATACCTCAGATTCTTAATCCAAATCCAGATGCCATGTCTAAGATGATAACAGAAAATGCAAGCGAGGAATTCCTTCATTCTCTGAGTAATTATTGTGCACTTCAGGGTTTTGTGGAGGACCAGTTTGGCTTAGGTTTAATTGCAAGGGCAGTTGAAGAGGGGATATCAGTAATCAAACCAAATGGAATTATGATCTTTAATATGGGAGGTCGCCCAGGTCAAGGTGTTTGCAAACGATTGTTTGAACGTCGTGGTTTTCGCATTACAAAGCTTTGGCAAACTAAAATCATTCAGGCTAACATTGCAGCCTTAGTTGAAATTGAGAAGAACAGTCCACATCGTTTTGAGTTTTTTATGGGACTTTCTGGAGATCAGCCTATTTGTGCACGGACAGCGTGGGCTTATGGAAAGTCTGGTGGCAGCATTTCCCATGCTTTATCAGTTTACAGTTGTCAACTTCGTCAACCTAACCAGGTCAAGGTTATATTTGACTTTCTAAAAAATGGATTTCAAGAGATCAGCAGTTCTCTAGATTTGTCTTTTGAGGACGATTCTGTTGCTGATGAGAAGATTCCTTTCCTTGCTTATCTTGCAAGCACTCTAAAAAATAATTCTTATTTTCCATATGAGCCACCAGCTGGAAGCAAACGTTTCCGCAATCTCATTGCTGGATTTTTGAAGACTTATCACCACATTCCACTCACTGCTGATAATATTGTCATTTTTCCTTCAAGGACTGCAGCTATTGAGAATGCTCTTCGCTTGTTCTCACCTCGCCTGGCAGTTGTTGATGAACATCTGACTCGATACCTACCTAAGCAGTGGTTAACATCTTTGGCACTTGAGAACACAGGAACTATTGACTCTTCAGATGATACGATTACTGTAATTGAAGCCCCTCGGCAATCAGACTTAATGATAGAACTAATAAAGAAATTGAAGCCTCAAGTGGTGGTGACTGGGATTGCTTATTTTGAGGCTGTTACTAGTTCAGCTTTTGTGCACCTCTTAGATACAACACGAGAGATTGGATCCCGTCTTTTCTTAGACATATCAGATCATTTTGAGCTATCTAGCCTTCCAGGATCAAATGGGGTACTGAAGTATCTTTCAGGAAATCCTCTGCCTTCTCATGCAGCAATTATATGTGGACTGGTAAAGAACAAGGTTTATCCAGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCTCTCTTCAATGCCTTGTCTAAAACTGTTGAATTACTAGAAGGCAATACTGCATTAATTAGTCAGTACTATTATGGCTGTATTTTTCATGAGCTTATTGCTTTTCAGCTTGCCGGCCGACGTGCACCTGTTGAGAGAAGCTGTGAAAATGTCAGATCAGTTGATCTGATAGGATTTGCTAAATCAGCCTTATCAGTCCTTAATAATGCTGAGCTATCAATTGATGGGGTAGAGAATGGCTCCCTGATCCACATGGATATTGATCAAATCTTCTTACCTGTTCCATCTCCTGTTAAAGCTGCTGTTTTCGAAAGTTTTGCTAGACAAAACATGTCTGAGTCTGAAACTGATGTCACTACAAGCATTAAAAAATTTGTCAAGAGCAACTATGGTTTTCCAACAAATAGCAGCACGGAATTTATATATGCTGACAATTCAAAAGCTCTTTTCAATAAGCTGGTCCTCTGCTGCATCAAAGAAGGGGGAACCCTCTGTTTTCCTTCTGGATCAAATGGGAACTATGTTTCTTCTGCTAGATTTTTGAAAGCTGACATAGTGATAGTCCCTACAGATGTCAATGTAGGTTTTAAGTTCACAGAAAAGACACTCACTGGAGTCCTTGGGACTGTGAAAAACCCATGGGTGTATATTTCTGGTCCTACAGTCAGTCCGACTGGCTTAATTTATAGCAACAATGAGATAGGAGAGATTTTAAGCACTTGTGCTAGATTTGGTGCAAGAGTGATAATTGATACGTCATCCTCTGGTTTGGAATTTGACTGTGAAGGTTGGGGTGGCTGGGATTTGGAAGGCTGTTTGTCTAAGCTGAATTCTTCATTCAAGCCATCGTTCTGTGTGTCTCTTCTTGGAGGATTGTCTCTGAAGATGCTTAATGGTGTTCTCAGATTTGGGTTTCTTATTCTAAACCAGTCGGTTTTGGTTGAGGCATTTCATAGTTATCCAGGATTAAGCAAACCTCATAGTACTGTTAGATATGCTACAAAGAAGTTACTGGAGCTTAGAGAGCAGAAATCATCAATCCTATCAGATGCTATTGTTGAACATGCACGAATTTTGAAAAGTAGGTCCAAGTGCATGAAAGAGGCACTTGAGAAGAGTGGGTGGGATGTACTTGAATCGTGTGCTGGCGTTTCTGTTGTGGCCAAGCCCTCTGCATATCTTAACAAGACTATTAAGCTAAAGATTTCACCAAATGATGAAGGCAGCCAAGGAAATGCCGCTATGGAAATAAAGCTCGACGACTCTAATATTAGGAATGCCATTCTCAAAGTCACTGGTCTATGCATCAATAGTGGCTCCTGGACTGGAATTCCTGGATTTTGTCGGTTCAATATTGCGCTTGAAGAAAATGATTTCAAGAAAGCTTTGGATTGTATACTAAAACTCAGAGAAGTTGCACTAGATTAAAATGTGTCGTTGACACACGAACGATTGAGCTTCATTGCATGTCATTCTATCTATTTCCTTTTTTCTTAAGGAAAATTTGGGTGTTTGATTCCTCCTGTATACACGGTCTAACGGCCATGTTGTTCTTTTATGATTTGCATGGGTGCGCAATAATCATAAATGCGAACTATCTCATTTCGAGTCCCCTTTTTTTAACATTTATGCATGTTTCGTAGGGGCAGCTATAGCCTTGGCCATGCCCCCCC

Protein Sequence

>Glyur000250s00014126.1
MTPTVDEFLQQCKQSGDAAYATFRSLLERLDHPETRSQARIFLSXLQKRFPSKDSCDQCFQTYHFRIEDILLDQFEGYHGRSKLTMMVIPSIFLPEDWSFTFYEGINRHTDSIFKDRTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVSWINLYLNALDENGXPIYDEEKKTLLDRVEFHESDLLSYCRENEIQLERIVGCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPNGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKIIQANIAALVEIEKNSPHRFEFFMGLSGDQPICARTAWAYGKSGGSISHALSVYSCQLRQPNQVKVIFDFLKNGFQEISSSLDLSFEDDSVADEKIPFLAYLASTLKNNSYFPYEPPAGSKRFRNLIAGFLKTYHHIPLTADNIVIFPSRTAAIENALRLFSPRLAVVDEHLTRYLPKQWLTSLALENTGTIDSSDDTITVIEAPRQSDLMIELIKKLKPQVVVTGIAYFEAVTSSAFVHLLDTTREIGSRLFLDISDHFELSSLPGSNGVLKYLSGNPLPSHAAIICGLVKNKVYPDLEVAFVISEEESLFNALSKTVELLEGNTALISQYYYGCIFHELIAFQLAGRRAPVERSCENVRSVDLIGFAKSALSVLNNAELSIDGVENGSLIHMDIDQIFLPVPSPVKAAVFESFARQNMSESETDVTTSIKKFVKSNYGFPTNSSTEFIYADNSKALFNKLVLCCIKEGGTLCFPSGSNGNYVSSARFLKADIVIVPTDVNVGFKFTEKTLTGVLGTVKNPWVYISGPTVSPTGLIYSNNEIGEILSTCARFGARVIIDTSSSGLEFDCEGWGGWDLEGCLSKLNSSFKPSFCVSLLGGLSLKMLNGVLRFGFLILNQSVLVEAFHSYPGLSKPHSTVRYATKKLLELREQKSSILSDAIVEHARILKSRSKCMKEALEKSGWDVLESCAGVSVVAKPSAYLNKTIKLKISPNDEGSQGNAAMEIKLDDSNIRNAILKVTGLCINSGSWTGIPGFCRFNIALEENDFKKALDCILKLREVALD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	216474	227760	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08247	E2.1.1.12	EC:2.1.1.12	Selenocompound metabolism	map00450

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008168 methyltransferase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014126.1	PF12847.2	Methyltransf_18	115	216	6.80E-08
Glyur000250s00014126.1	PF00155.16	Aminotran_1_2	727	1075	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.837
SRR1783600	control	21.126
SRR1783602	moderate drought stress	20.112
SRR1811619	moderate drought stress	19.989

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.788
DRR006520	Root Summer glycyrrhizin high producing strain	12.555
DRR006521	Root Winter glycyrrhizin high producing strain	6.309
DRR006522	Root Winter glycyrrhizin high producing strain	5.989
DRR006523	Root Summer glycyrrhizin low producing strain	11.757
DRR006524	Root Summer glycyrrhizin low producing strain	11.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.956

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.309
SRR2868004	Drought Stress (root)	46.765
SRR2967015	Control (root)	42.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.672
SRR9715740	Leaf	15.416
SRR9715741	Leaf	16.305
SRR9715739	Root	5.492
SRR9715742	Root	16.804
SRR9715743	Root	15.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.752
SRR8749028	MeJA induced 9h	22.204
SRR8749029	MeJA induced 9h	12.661
SRR8749030	Uninduced	9.472
SRR8749031	Uninduced	10.837
SRR8749032	Uninduced	5.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.694
SRR8400027	Control - Root	40.508