Gene detail information of Glyur000250s00014120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G59740.1 | 0 | Major facilitator superfamily protein |
| NR | XP_003540130.1 | 0 | PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] |
| COG | YP_008149431.1 | 4.00E-19 | hypothetical protein SCE1572_14985 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q93VV5|PTR16_ARATH | 0 | Protein NRT1/ PTR FAMILY 4.3 |
| trEMBL | tr|I1LT88|I1LT88_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G28510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00250 | 189077 | 191609 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000250s00014120.1 | PF00854.16 | PTR2 | 111 | 506 | 2.50E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.900 |
| SRR1783600 | control | 5.065 |
| SRR1783602 | moderate drought stress | 1.798 |
| SRR1811619 | moderate drought stress | 1.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.116 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.327 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.110 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.337 |
| SRR2868004 | Drought Stress (root) | 66.169 |
| SRR2967015 | Control (root) | 37.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.452 |
| SRR9715740 | Leaf | 0.214 |
| SRR9715741 | Leaf | 0.572 |
| SRR9715739 | Root | 25.120 |
| SRR9715742 | Root | 15.479 |
| SRR9715743 | Root | 14.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.109 |
| SRR8749028 | MeJA induced 9h | 4.852 |
| SRR8749029 | MeJA induced 9h | 1.325 |
| SRR8749030 | Uninduced | 0.281 |
| SRR8749031 | Uninduced | 0.147 |
| SRR8749032 | Uninduced | 0.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.980 |
| SRR8400027 | Control - Root | 18.649 |