Gene detail

Gene detail information of Glyur000250s00014108

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49890.1	0	chloride channel C
NR	XP_003592890.1	0	Chloride channel protein CLC-c [Medicago truncatula]
COG	NP_927128.1	3.00E-28	chloride channel protein [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q96282\|CLCC_ARATH	0	Chloride channel protein CLC-c
trEMBL	tr\|Q1SKZ4\|Q1SKZ4_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000250s00014108.1
ATGTTTCGTGGGATAATTGAGAATGATCTTTTCAAGCAGGACTGGAGATCCAGAACAAAGGTTGAGATTTACCAATATGTTGTGCTGAAGTGGACCCTTGCACTTCTCATTGGTTTATTTACCGGATTTGTTGGCTTCTTTAATAACCTTGGAGTTGAGAATATCGCTGGTTTCAAACTTTTACTCACCAACAATCTCATGCTCAGGCAAAAGTATCATCAGGCTTTTGCAGTGTATGTTGGGTGTAACATGATTTTAGCGATTGCCGCTGCAGCCCTCTGTGCATACATTGCCCCTGCAGCAGCAGGGTCTGGCATACCTGAGGTGAAGGCATACCTCAATGGCATAGACGCACATTCTATATTGGCTCCGAGTACCCTCTTTATTTTGGGTTCAATATTTGGGGTTGCTGCGGGGTTTGTGGTGGGTAAAGAAGGACCAATGGTACACACGGGTGCCTGCATAGCTAATTTGCTGGGACAAGGTGGTTCTCGAAAATATCGGCTGACTTGGAAATGGCTCAAATACTTTAAAAATGATAGAGATCGAAGGGATTTGATCACTTGTGGTGCAGCTGCCGGTGTTGCTAGTGCCTTCCGNGCCCCTGTTGGTGGTGTCCTTTTCGCACTCGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTCCTGTGGCGCACTTTCTTTACAACGGCTGTAGTGGCTGTGGGAGGAAAATGCGGTCTCTTTGGGGAGGGGGGACTGATAATGTTTGATGTGAATTCGGCAAAGCCTGCGTATAGCACACCTGACCTCTTGGCAGTTATATTTNTTGGAGTCATCGGAGGTCTCATGGGAAGCTTTTACAATTATCTGGTGGATAAGGTCCTTCGCACTTACAACATTATAAATGAGAGAGGCCCAATATTCAAGGTTTTACTTGTCATCGTGATATCGCTTATGACCTCTTCCATTCGATTCGGGCTTCCATTGCTATCAAAGTGTGTGCCTTGTCCGAGGGATGAGTGCCCAAACCCAACTGAAGGGGCAGGGGCGGCAGGGCTCTCAATACAGTTACAGTACAACAGTTTTCAATGTCCAGCCAACCACTACAACGACCTGACCTCTCTCTTTTTCACCACCAATGATGATGCCATCCGCAACCTATTCATTGCGGGGTCTGCAGATAATAAGGGATCATTTCGGATTTCGAGTCTTGTAATATTCTTCGTGGCCATATACCTGCTGGGAATTGTGACTTATGGCATTGCCATCCCATCTGGACTCTTCATCCCTGTCATACTTGCGGGAGCCTCGTACGGGCGTCTTGTGGGGAGCGTGTTGGGCCCATTCACTGTTCTGGATACGGGTTTGTTTGCCCTCCTCGGAGCTGCATCCTTCCTCGGTGGCACCATGAGAATGACTGTTTCCATCTGCATCATTCTNCTTGAGCTCACCAATGACCTCCTCATGCTCCCCCTCCTCATGCTCGTTCTCCTCATCTCAAAGACCGTTGCCGACTGTTTCAACAAAGGTGTTTACGATCAGATTGTGGAGATTAAGGGGCTACCTTACATGGAGGCACATGCAGAGCCATACATGAGGCATTTGGTTGCCAGTGACGTTGTTTCTGGTCCCCTGTTCACTTTTTCCGGGGTTGAAAAAGTGGGCAACATTGTGTATGCTTTGAAGACCACGGGACACCATGGGTTTCCAGTAATTGACGACCCTCCTTTCTCGGATGCTCCACAGTTGTGTGGGTTGGTTTTGAGGTCTCACCTGCTCCTACTTCTTCAACACAGGACATTCACTGCGCATAAGGTGATGACGGGGCCTACCATCATGAACAAGTTTAAGGCGTTTGATTTTGCAAAGCCGGGTTTGGGCAGAGGGATAAAGCTGGAGGATTTAGACATCTCAGAAGATGAGATGGAAATGTTTGTGGATCTCCATCCAATCACTAATACCTCCCCATACACAGTAGTGGAAACAATGTCTCTTGCAAAGGCTGCTCTTCTTTTTAGGGAGCTTGGCCTCAGGCACTTGCTGGTGGTGCCCAACACACTGGGAAGACCTCCAATTGTTGGGATTCTGACGAGGCATGATTTCATGCCCCNGCATGTCTTGGGACTATTCCCCCACTTGAAACCCCGCAAGTAGAGCAGCACGCCTGCTTGATCTTTCATCAAATCCTATCAACACTGATACATATAATATAGAGCATCGTATATCATATCGATCCTTGTATACCATAGACTAATGAAGATCTTTACTGAATCGGGTTGTAATTCTAGGAGATGTGAGAAAGCGGCATAACGGATGGACATGGACATGATATGAATTTCCATTGCTTCTTTATTTTTCATTTTGGGAACTTGTTCTGATTTGGATATTACTGCACAAATTATCATTTTGTTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	117448	121184	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014108.1	PF00654.15	Voltage_CLC	86	498	5.50E-82
Glyur000250s00014108.1	PF00571.23	CBS	530	589	2.30E-06
Glyur000250s00014108.1	PF00571.23	CBS	646	694	3.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.130
SRR1783600	control	0.133
SRR1783602	moderate drought stress	0.062
SRR1811619	moderate drought stress	0.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.132
DRR006520	Root Summer glycyrrhizin high producing strain	0.134
DRR006521	Root Winter glycyrrhizin high producing strain	0.326
DRR006522	Root Winter glycyrrhizin high producing strain	0.395
DRR006523	Root Summer glycyrrhizin low producing strain	1.131
DRR006524	Root Summer glycyrrhizin low producing strain	1.190
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.310
SRR2868004	Drought Stress (root)	0.704
SRR2967015	Control (root)	0.470

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.303
SRR9715740	Leaf	1.131
SRR9715741	Leaf	1.184
SRR9715739	Root	0.000
SRR9715742	Root	0.071
SRR9715743	Root	0.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.473
SRR8749028	MeJA induced 9h	5.558
SRR8749029	MeJA induced 9h	4.616
SRR8749030	Uninduced	4.631
SRR8749031	Uninduced	3.583
SRR8749032	Uninduced	3.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.424
SRR8400027	Control - Root	0.762