Gene detail information of Glyur000250s00014105.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10280.1 | 4.00E-130 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | ABE91847.1 | 0 | Protein of unknown function DUF266, plant [Medicago truncatula] |
| trEMBL | tr|Q1SKV2|Q1SKV2_MEDTR | 0 | Core-2/I-branching enzyme {ECO:0000313|EMBL:KEH36410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00250 | 104987 | 108180 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000250s00014105.1 | PF02485.16 | Branch | 40 | 267 | 1.50E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.942 |
| SRR1783600 | control | 7.022 |
| SRR1783602 | moderate drought stress | 9.368 |
| SRR1811619 | moderate drought stress | 9.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.683 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.881 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.766 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.166 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.383 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.887 |
| SRR2868004 | Drought Stress (root) | 9.416 |
| SRR2967015 | Control (root) | 9.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.210 |
| SRR9715740 | Leaf | 2.073 |
| SRR9715741 | Leaf | 3.945 |
| SRR9715739 | Root | 11.956 |
| SRR9715742 | Root | 11.929 |
| SRR9715743 | Root | 12.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.664 |
| SRR8749028 | MeJA induced 9h | 9.853 |
| SRR8749029 | MeJA induced 9h | 5.516 |
| SRR8749030 | Uninduced | 7.432 |
| SRR8749031 | Uninduced | 4.749 |
| SRR8749032 | Uninduced | 4.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.461 |
| SRR8400027 | Control - Root | 10.570 |