Gene detail

Gene detail information of Glyur000250s00014102

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G10270.1	glutamine-rich protein 23
NR	XP_006592648.1	PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Glycine max]
Swissprot	tr\|Q9SY69\|PPR29_ARATH	Pentatricopeptide repeat-containing protein At1g10270
trEMBL	tr\|K7LVA6\|K7LVA6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G28610.2}

Sequence

Transcript Sequence

>Glyur000250s00014102.1
ATGTCTCTTTGCCGCCTTCTCCTCCGCTCTCTCCGGCGTTCCCCCGCCGTCCCTCCCATCTCCGTCACCGTGCGTTCCTTTGCGTTTTCCTCGGCGGAAGAGGCGGCTGCGGAGAGGCGGCGACGGAANCGGCGGCTGCGCATCGAGCCTCCCCTGAACGCGATTCGTCCTCCGCCGCAGCATGGCCCGTCGCGTGACCCGAACGCCCCCCGGCTTCCGGACTCGACGTCGGCGCTGGTGGGCCCCCGGCTGAGCCTGCACAACCGCGTGCAGTCTCTGATCCGTGCCGGCGACCTTGACGCCGCCTCCGCCGTGGCCCGTCACTCGGTGTTCTCGGTGACCCGCCCGACGGTGTTCACGTGCAACGCCATCATCGCGGCCATGTACCGCGCTCAGAGGTACAGCGAGGCCATCGCCCTGTTCCACTTCTTCTTCAACCAGTCGAACCTCGTCCCCAACATCGTCTCCTACAACAACGNGATCAACACACACTGCGACGAGGGGCGCGTGGACGTGGCCCTCGAGGTGTATCGGCACGTGATGNCCAGCGCCCCCTTCAGCCCTTCCCCCGTCACGTACCGCCACCTCACGAAGGGCCTCATCGCCGCCGGCCGCATCGACGAGGCCGTGGACCTCCTGCGGGAGATGCTGAGCAAGGGCCACGGCGCCGACTCCCTCGTCTACAACAACCTCATCTCCGGCTTCCTGGAGCTGGGCAACCTGGAGAGGGCCAACGAGCTGTTCGACGAGCTGAAGGAGCGGTGTCTGGTGTACGATGGGGTCGTCAACGCCACTTACATGGAGTGGTTCTTCCGGCAGGGCAGGGACAGGGAGGCCATGGACTCCTACAGGTCCCTCATGGACCGCCAGTTCAGGATGACCCCCGCCACCTGCAACGTCCTCCTTGAGGTCCTCCTCCGCCATGGCAAGGACTCCCAGGCATGGTCCCTGTTTGAGCAGATGCTCGACAATCACACNCCGCCCAATTTCCAGGCAGTGAACTCTGATACCTTCAACATCATGGTCAACGAGTGCTTCAGTCTGGGCAGGTTTGCGGAAGCACTTGCCACTTTTAAGAGGGTCGGGACTAAGCCCAACTCCAAGCCCTTTGCGATGGATGTTGGGGGCTACAACAACATCATCGCCAGGTTCTGTGAGAATGGGATGCTATCTGAGGCGGAGACGCTCTTTGAAGAACTGTGCTCCAAGTCCCTGAGCCCCGATGTGCCTACTCACAGGACTCTNATTGATGCCTACCTGAAACTGGAGAGGATCGATGATGCCTTGAGGGTGTTCAACAGAATGGTGGACGCTGGCCTCAGGGTGGTCGCCGGCTTTGGCAACAGGGTGTTTGATGAATTGATCAAGAATGGCAGGGCTGTTGACTGTGCACAGATTCTGAGCAAAATGGGAGAAAAGGATCCCAAACCGGACCCCACCTGCTATGAGGTTGTGATCAGGGGGCTCTGTGCTCAGGGCTTGTTGGATAGAAGCCGAGACTTGCTGGACGAGGTCATGAGGTATGGCGTTGGGGTCACTTCTGCCTTGCGGGAATTAGCGACTGAGGCTTTCAAGAATGCTGGGAGGGGTGAGGAGATTGAGAGGCTGCTAGATGTGAACCGCCCCCGTCCCCCATCTGGGCCGCCAAGACCTGCATACCGGCCGCCGCCACCACCACCAAGGTCCCCTTCACAGCAGCGCCCACCACCGCCTGATGCTCGAACGGCTGGAGCACATAACCACCACCATCAAGTTTCTTCAGGGCAGCAGCGCCCCCCGCTGCCTCCTCAGATGCATCATCAACCACCTTCTTCATGGGGAGTACCTCCTCCAATGGCTGGGCCTCACAATCACATGCCAGCAGCAGCCGGTACAACAGGACAGCCTTACCACCACCCTCAATCAGAACTTCCTCCTCATATGAAAAGGGTGGCCCCTCAAATGACATCAAACCATTACACACCTTCACCTCCAATGGCAGGACATCAACCTTACTGGCCACCTTCTGGGCCCCAACAATCATCATATCCACCCTCAGGGCCAACTCCTCCATCATATGGAGCACCAGCTGAAACGTCAATGCCTCCATATTATACAGCCCCAGGACCATCTCCTCAGATGACAGGACCATATCACCCATCATCTGGAACCCCTCCTCNTCACTTTGAAGAATCACATCAAGAGCAATCAGAAGCCCCCGAACAGGTTGCAGCAAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	86907	89126	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014102.1	PF13041.1	PPR_2	152	200	1.50E-07
Glyur000250s00014102.1	PF01535.15	PPR	227	254	3.30E-05
Glyur000250s00014102.1	PF01535.15	PPR	297	324	0.038
Glyur000250s00014102.1	PF01535.15	PPR	337	360	0.31
Glyur000250s00014102.1	PF13041.1	PPR_2	373	420	1.80E-10
Glyur000250s00014102.1	PF01535.15	PPR	481	510	0.091

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.395
SRR1783600	control	57.828
SRR1783602	moderate drought stress	97.345
SRR1811619	moderate drought stress	100.487

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.771
DRR006520	Root Summer glycyrrhizin high producing strain	40.951
DRR006521	Root Winter glycyrrhizin high producing strain	27.326
DRR006522	Root Winter glycyrrhizin high producing strain	27.013
DRR006523	Root Summer glycyrrhizin low producing strain	47.408
DRR006524	Root Summer glycyrrhizin low producing strain	47.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.453
SRR2868004	Drought Stress (root)	25.006
SRR2967015	Control (root)	25.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.983
SRR9715740	Leaf	14.678
SRR9715741	Leaf	14.075
SRR9715739	Root	46.901
SRR9715742	Root	42.962
SRR9715743	Root	34.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.292
SRR8749028	MeJA induced 9h	33.744
SRR8749029	MeJA induced 9h	25.831
SRR8749030	Uninduced	12.999
SRR8749031	Uninduced	11.602
SRR8749032	Uninduced	16.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.874
SRR8400027	Control - Root	38.684