Gene detail information of Glyur000250s00014101.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18530.1 | 4.00E-100 | Protein of unknown function (DUF707) |
| NR | XP_003592883.1 | 0 | hypothetical protein MTR_2g005330 [Medicago truncatula] |
| trEMBL | tr|G7IL64|G7IL64_MEDTR | 0 | Lysine ketoglutarate reductase trans-splicing-like protein {ECO:0000313|EMBL:AES63134.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00250 | 74646 | 81744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000250s00014101.1 | PF05212.7 | DUF707 | 68 | 153 | 1.00E-13 |
| Glyur000250s00014101.1 | PF05212.7 | DUF707 | 156 | 316 | 1.40E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.791 |
| SRR1783600 | control | 4.715 |
| SRR1783602 | moderate drought stress | 5.880 |
| SRR1811619 | moderate drought stress | 5.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.984 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.738 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.286 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.165 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.640 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.206 |
| SRR2868004 | Drought Stress (root) | 8.271 |
| SRR2967015 | Control (root) | 8.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.931 |
| SRR9715740 | Leaf | 8.862 |
| SRR9715741 | Leaf | 8.453 |
| SRR9715739 | Root | 1.811 |
| SRR9715742 | Root | 5.315 |
| SRR9715743 | Root | 4.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.341 |
| SRR8749028 | MeJA induced 9h | 5.939 |
| SRR8749029 | MeJA induced 9h | 5.252 |
| SRR8749030 | Uninduced | 4.438 |
| SRR8749031 | Uninduced | 1.998 |
| SRR8749032 | Uninduced | 2.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.119 |
| SRR8400027 | Control - Root | 9.967 |