Gene detail

Gene detail information of Glyur000250s00014098.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G10240.1	FAR1-related sequence 11
NR	XP_006588528.1	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SY66\|FRS11_ARATH	Protein FAR1-RELATED SEQUENCE 11
trEMBL	tr\|I1L7C4\|I1L7C4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G00380.1}

Sequence

Transcript Sequence

>Glyur000250s00014098.1
GGAAACTGGAAAGTGTGTCCGCTAGCTGTTGCTAGCATTTCTCCGTAAACAAAACGGAGCGTTTAAGCAAAGAATGGAAGAGTAAANCCCAATACGATTGTGAAGACATTTGGTTGGGTTATCGTTTTGTTCGTGCGTGGTGCAGTTAGGGTTTCCCTCCATTTCCTCACATTCACAGGCACAGCGTATGCTACACAATATCGCTATTCTTCCATCCTTTTCAATTAAACTCACTGCGTCGTGAGATACGGCATAGCGTATCTTGAGCTGGTCACTGGGAAAAAACGCATGATGTCTGAAGAGGCTGGATCAATGTTGGTTGTTTATGATGACCCCTCTGACCAACGCTCACTATCTTTGGGTGATACAAGCAGCACAGAGGAGTCGCCCGATGAAACCAGACTCTCCTTGGAAACAATTAATGATGCTATTCCATACATTGGTCAAAGGTTTTCCACCCATGACACTGCTTATGAATTCTATAGTGAATTTGCCAAGAGGTGTGGCTTCTCAATTAGACGTCACCGTACAGAGGGGAAAGATGGCGTTGGGAAAGGACTTACTAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACCGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGATGCGGGTGTCAGGCTTACATGCGGATAAGCAAAACAACGGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAACCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCTTACAGAACTATCTCAGATGCTGACAAAAACCGAATCCTTATGTTCGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAACATTAAGGAGAAAGACCCTAATTTTAAATTTGAGTACACACTTGATATGAATAACCGTTTGGAAAATATTGCCTGGTCATATGCCTCATCGATCCAATTGTATGACATCTTTGGTGATGCCGTGGTATTTGATACAACACATCGCCTGACTGCATTTGACATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTCTTTGGCTGTGTGCTACTACGAGATGAAACCGTCAGGTCATTTTCCTGGGCAGTAAAGGCTTTCTTAGGGTTTATGGGCGGGAAGGCTCCCCAGACTATATTAACTGACCAAAATATATGTCTCAAAGAAGCACTAGCTGCAGAAATGCCAGCAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAATTTCCATCATGGTTCAATGCGGTTCTAGGGGAACGTTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGCTCACGCTCACTTTGGGCATTGCCATTTTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCGAAGTCAATCAATGCTTTCATTCAACGGTTTCTGAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTACAAAATGTTTGCCTCAAAACAGGAGCCCCCATGGAATCACATGCTGCCACGGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCGTCTTTTTCAATTGAAGATGGTTTTCTTGTAAGACATCACACAAAAGCTGAAGGAGGTCGGAAGGTTTATTGGTCCCCTCAGGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGACATTCTCTGAGAGTTCTTTCAACNGGAAATTGCTTTCAGATACCAGATAGATATCTTCCCATCCGATGGCGTCGAATCAGTATGCCCTCTTCTAAGCTTCTTCAAAGTGCACCAAGTGATCATGCTGAAAGGGTTAAGTTATTACAAAATATGGTTTCATCTCTGATTACAGAATCTGCCAAGTCTAAGGAACGATTAGATATTGCAACAGAACAGGTTTCCGTCCTTCTATCTCGCATAAGAGAGCAACCGATTTCGTTACAATGTGTCCGAGATATTTCTTCCATTAATAGGAATCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	54770	58407	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014098.1	PF03101.10	FAR1	63	156	1.40E-18
Glyur000250s00014098.1	PF10551.4	MULE	290	373	1.50E-12
Glyur000250s00014098.1	PF04434.12	SWIM	561	587	7.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.889
SRR1783600	control	6.887
SRR1783602	moderate drought stress	10.300
SRR1811619	moderate drought stress	10.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.324
DRR006520	Root Summer glycyrrhizin high producing strain	10.752
DRR006521	Root Winter glycyrrhizin high producing strain	7.803
DRR006522	Root Winter glycyrrhizin high producing strain	7.315
DRR006523	Root Summer glycyrrhizin low producing strain	11.544
DRR006524	Root Summer glycyrrhizin low producing strain	11.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.540
SRR2868004	Drought Stress (root)	12.693
SRR2967015	Control (root)	14.025

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.470
SRR9715740	Leaf	7.601
SRR9715741	Leaf	6.574
SRR9715739	Root	2.751
SRR9715742	Root	5.829
SRR9715743	Root	5.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.322
SRR8749028	MeJA induced 9h	21.488
SRR8749029	MeJA induced 9h	13.702
SRR8749030	Uninduced	13.865
SRR8749031	Uninduced	14.454
SRR8749032	Uninduced	11.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.263
SRR8400027	Control - Root	12.038