Gene detail

Gene detail information of Glyur000250s00014097.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54960.1	9.00E-56	NPK1-related protein kinase 2
NR	XP_003548345.1	1.20E-153	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Glycine max]
COG	YP_007162414.1	1.00E-23	serine/threonine protein kinase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q40541\|NPK1_TOBAC	5.00E-66	Mitogen-activated protein kinase kinase kinase NPK1
trEMBL	tr\|K7MEB8\|K7MEB8_SOYBN	4.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G00300.2}

Sequence

Transcript Sequence

>Glyur000250s00014097.1
ATGGCTGCAATGAGACTGGGTGAATGGGTGAAAGGCAAAATGGTTGGGTGTGGATCTTTTGGCACTGTCCATCTGGCCATGAACAAATCCACGGGTGGAATCTTCGTGGTGAAATTAGCGCATCCAGGGTCAGGGGCTGGGCGTGAGGCTTTGGAGAATGAGGTCAAAATCCTAGACACTCTAAATAACCCATCTTCNTCTTCTTCATCATCACCGTACATTGTGCAGTGTTTGGGGACAGAGGAGGACCACCAAGGCAACCTCAATGTATTCATGGAGTACATGGCAGGGGGTAGTCTGGCNGACGTGGCACACAAGTTCGGTGGAGCATTAGACGAAGAGGTGGTTCGAGTGTATACCCGAGAGATCCTTCGCGGGTTNAGCCATCTTCACCGGCATGGAATTGTGCATTGTGACCTCAAGTGCAAGAATGTGCTTCTGGGCTCATCTGGGAACATCAAGCTCGCTGATTTTGGGTGTGCAAAAAGGGTAAAGGACTTGAAGCAGTGGCAGTGGCAATGGCAATGGCATTGCACTGGGGGCACTCCTCTGTGGATGGCTCCCGAAGTACTGAGGGATGGGACATTGGGTTTTGCTGCAGATATATGGTCTTTGGGGTGTACGGTTATTGAGATGGCTACTGGTAGGCCTCCTTGGGCAGATGAGGTTTCGAATCCCGTGGTTGCTATGCTCAGGATTTCCCATGGTGATGGGGTGCCTCAATTCCCATCCCATTTCTCCAAGGAGGGCTTGGATTTCTTGGCCAGGTGCTTGGAGAGAGAACCCAATAAGAGGTGTACCNCCGGGGAGTTACTTAGCCATCCCTTTGTTTCAACCTCGACAAGGCCGTCTCGGAAAGACTACGCTTCCTCACCGGCAAGTGTCTTGGAGGTTCAAGTTTTTGAGGATGCTTATGATTCCGATGATGAATCGGATCAGAGNCCAGAGGGTAATGATTTCTCATTTGTGTGCCATGATATCCTANAAGGAACAACAACCACCATATGGCAACCGGAAGACAATAATAATGCATTAGGGTCATCGGGGAATTGGATTACTATTAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	51665	52732	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014097.1	PF00069.20	Pkinase	11	277	2.70E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.115
SRR1783600	control	0.118
SRR1783602	moderate drought stress	0.328
SRR1811619	moderate drought stress	0.355

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.717
DRR006520	Root Summer glycyrrhizin high producing strain	0.688
DRR006521	Root Winter glycyrrhizin high producing strain	0.627
DRR006522	Root Winter glycyrrhizin high producing strain	0.612
DRR006523	Root Summer glycyrrhizin low producing strain	0.080
DRR006524	Root Summer glycyrrhizin low producing strain	0.104
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.002
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.860

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.034
SRR2868004	Drought Stress (root)	1.751
SRR2967015	Control (root)	1.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.126
SRR9715740	Leaf	1.461
SRR9715741	Leaf	1.132
SRR9715739	Root	0.601
SRR9715742	Root	0.288
SRR9715743	Root	0.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.026
SRR8749028	MeJA induced 9h	0.179
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.041
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.018
SRR8400027	Control - Root	1.132