Gene detail

Gene detail information of Glyur000250s00014095.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G57700.1	0	Protein kinase superfamily protein
NR	XP_003539386.1	0	PREDICTED: probable serine/threonine-protein kinase At1g09600-like isoform X1 [Glycine max]
COG	YP_007134079.1	7.00E-22	serine/threonine protein kinase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|K7LVB0\|K7LVB0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G28651.1}

Sequence

Transcript Sequence

>Glyur000250s00014095.1
ATGGGTTGCATATGCTCCAAGGCAAAATCTGCAAATGATTACGTTGCTGATAACCACCACAAAGAATTGAAGGCAAACATATCCTCAAAGCATCTGGGAAGGGGAGACACGGTTGTAACGGAAAATGACGNCACTGCACGCCTCATATCCAACGTCGGTAATGAAGCCTCCATGCCCGCTTCCTCAGAATCGGATGAAGGGGATAAGGAAAAGGAGAAGGACGGGGCAACTTGTGCAAAACCACTTGTTCGGACGGGATCAAACGGGAGTTTTGCCAGTGGAGGGCAACCTAGGATCTCCAGGATACCCAGTGTGACTAGAGGGGANAGAGGGGCACAAGTTCTCGCCGGCTGGCCTTCTTGGCTCACTGCGGTTGCGGGCGAAGCCATTAATGGTTGGGTACCTCGCAGAGCAGACTCATTTAAGAAGTTGGACAAGGCAAGTTTCACTTTTTCTCTTTATTACGCTTCTATTATCTATACTCTATATCCCAATAAGCAAACAAACATTCCTATCATACTGCAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGAGCTCNTGATCTTGAAACAAACAAAATTGTTGCATTGAAGAAGGTTCGGTTTGCTAATATGGATCCAGAAAGTGTTCGGTTTATGGCAAGAGAAATTGTTGTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGAGCATGATCTTGCTGGGCTTGCAGCAATTCCTGCCATCAAGTTTACCGAGGCACAGATCAAGTGTTATGTGCAACAACTTCTCCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATCGGCGATTTTGGGCTTGCAACTTTGTTTCAGCCATCTCAACGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCGCCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCCGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCTATAATACCTGGACGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGCGGATCTCCTTCTGAAGAATACTGGAAAAAGTCAAAGCTACCACATGCGACAATTTTCAAACCTCAACAGCCTTACAAACGTGTTGTTTCTGAGACATTCAAAGATTTTCCTTCATCAGTGCTGAGCCTCCTGGAGGTCCTACTTGCTGTAGAACCAAAAGATCGAGGAACTGCATCTTCAGCACTTCAGAATGAGTTCTTCACATCAAAGCCACTTCCTTGTGATCCATCAACTCTGCCAAAGTATCCACCAAGTAAGGAGTTTGATGCTAAACTTCGAGAAGAGGAAGCTAGAAGACGACGAGCTGCAAATAAAGAACATGGACAGGAATCAGTTAGAAAGAATTCTAAAGAGTCTAGAGCCGTGCCAGCACCTGATGCGAATGCCGAGTCTCNGGCATCTATAGAGAAGAGACAAGGGCAGTGTGATTCAAAGTGCATTAGTGAGAAGTTCATTCCTGGAGAGGATGGTGGTTATGGCTTCCCTCTAGAACCTGCAAAGTCAAGAGCACTCAATGTCTTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGCATATGGATCCTCACGCAATATGAATTTAAAAGAGGAAGATGTTCTTACTGGCCCTAATCATGCCTTTACATCAACAAACTCCGAGTTGAGAAAACAAAAATCCTTTTGGCACGGTAGCACTGCACAATTGTCGAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACAGCTTGATATGAGTGGAGACTATAGTGTGAATTCACAGTGGCCAGAGGATCACTTCGATATGACATATGGTCATTTGGGTGATGGTGAGTCCAACCAATTGCTGGATGGACCCAAGGCTTCACGCAAGAAACACTTCCATCTACATGGGAAGGACCGTGCCATGGGCTATGCTCCCAAAAATGGTCGCATCCACTATTCCGGACCATTACTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAGCACGAAAGGCAAATCCAAGAGGCTGTCCGCAAAGCTCGTTTGGATAAGGACAAGATAAAAAAGGTTGNCAGTGAGAATGGCCTAACTGAATCGGTATTCCACCATGTGGGAAATCACAAGTGATCACTTTTAAGAGGGTTTTGATGCATTCATTTAATTTGGGATGAGGATACTTGAGCACAAAGATTGTGGTGATCACAATGCCAAGATAAATATTTCTTTTGGAAATTATTCATTAAATCTTGATGCTGGGAGATGATGACTAAAACTCGTGAGGCTTCAATGAACTCCTACACACCGGAACTACCACAGAAGGAATTGTACATACTTCTAACCAACAAACTTACATGTCAGGAAGGCGGATATATACTGGATAGTGAATAGAGCAAATGAAATCCATGGCGATTGATTGTATAATAGTTTATTTTTTATTTTATTAATCAACACAGTGAGTTGTTTCATTCCAGACGGCGAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00250	38222	43865	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000250s00014095.1	PF00069.20	Pkinase	175	454	6.90E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.026
SRR1783600	control	2.011
SRR1783602	moderate drought stress	1.723
SRR1811619	moderate drought stress	1.713

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.438
DRR006520	Root Summer glycyrrhizin high producing strain	2.338
DRR006521	Root Winter glycyrrhizin high producing strain	1.425
DRR006522	Root Winter glycyrrhizin high producing strain	1.436
DRR006523	Root Summer glycyrrhizin low producing strain	1.077
DRR006524	Root Summer glycyrrhizin low producing strain	1.052
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.797
SRR2868004	Drought Stress (root)	6.572
SRR2967015	Control (root)	5.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.637
SRR9715740	Leaf	1.861
SRR9715741	Leaf	1.006
SRR9715739	Root	0.353
SRR9715742	Root	1.989
SRR9715743	Root	2.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.512
SRR8749028	MeJA induced 9h	1.866
SRR8749029	MeJA induced 9h	1.361
SRR8749030	Uninduced	1.486
SRR8749031	Uninduced	0.856
SRR8749032	Uninduced	0.777

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.713
SRR8400027	Control - Root	10.230