Gene detail information of Glyur000249s00015888.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05010.1 | 3.00E-40 | ethylene-forming enzyme |
| NR | AFK41584.1 | 7.74E-62 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9MB94|ACCO_PRUMU | 2.00E-58 | 1-aminocyclopropane-1-carboxylate oxidase |
| trEMBL | tr|I3SMU2|I3SMU2_LOTJA | 3.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:AFK41584.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00249 | 226716 | 228577 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05933 | E1.14.17.4 | EC:1.14.17.4 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000249s00015888.1 | PF14226.1 | DIOX_N | 5 | 99 | 2.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.325 |
| SRR1783600 | control | 0.321 |
| SRR1783602 | moderate drought stress | 0.289 |
| SRR1811619 | moderate drought stress | 0.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.415 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.582 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.726 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.912 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.388 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.525 |
| SRR2868004 | Drought Stress (root) | 24.198 |
| SRR2967015 | Control (root) | 11.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.812 |
| SRR9715740 | Leaf | 3.050 |
| SRR9715741 | Leaf | 75.196 |
| SRR9715739 | Root | 6.744 |
| SRR9715742 | Root | 120.113 |
| SRR9715743 | Root | 94.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.357 |
| SRR8749028 | MeJA induced 9h | 0.893 |
| SRR8749029 | MeJA induced 9h | 0.837 |
| SRR8749030 | Uninduced | 110.078 |
| SRR8749031 | Uninduced | 136.900 |
| SRR8749032 | Uninduced | 66.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.807 |
| SRR8400027 | Control - Root | 11.354 |