Gene detail

Gene detail information of Glyur000249s00015887.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05010.1	3.00E-118	ethylene-forming enzyme
NR	AFK41584.1	0	unknown [Lotus japonicus]
COG	YP_003514298.1	4.00E-30	2OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728]
Swissprot	tr\|Q08507\|ACCO3_PETHY	0	1-aminocyclopropane-1-carboxylate oxidase 3
trEMBL	tr\|I3SMU2\|I3SMU2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK41584.1}

Sequence

Transcript Sequence

>Glyur000249s00015887.1
ATAGACACACAAACTACTAAGATAACCCAAAATACAAAAGAGAGAAGAAAAAAGTGAGAGAGAAAAAAATGGAGAACTTCCCAGTGATCAACTTGGAGAACATCAATTGTGAGGAGAGAGAGGCTATCCTTGAGAAAATCGAAGATGCCTGCCAGAACTGGGGATTTTTTGAGTTGGTGAATCATGGAATACCCCATGAGCTTTTGGACACCGTGGAAAGGTTAACAAAGGAGCATTACAGGAAATGCATGGAGCAGAGGTTCAAGGAGAAAGTGGCAAGCAAGGGGTTAGAGTTAGATGATAATAGTGTGAAGGAAGACATGGACTGGGAGAGCACCTTCTTCTTGCGCCACCTCCCTGACTCCAACATCTCAGAAATCCCTGATCTCACCCAACAGTACAGGGAGGCGATGAAGGAATTTGCGGGGAAGTTGGAGAAACTGGCAGAGGAGCTGTTGGAGTTGTTGTGTGAGAATCTTGGGTTGGAGAAGGGATACCTGAAGAAGGCGTTTCACGAATCAAAGGGTCCGAATTTCGGGACAAAGGTGGCAAACTACCCACCGTGTCCGAAGCCAGAGCTGGTGAAGGGTCTTCGTGCACACACCGATGCGGGTGGCATCATCCTTCTCTTGCAAGATGACAAGGTCAGTGGCCTTCAGCTCCTCAAAGATGGCCACTGGGTCGATGTTCCCCCTATGCGCCACTCCATTGTTGTCAACCTCGGTGACCAACTTGAGGTGATCACCAACGGGAAATACAAGAGTGTGGAGCATCGTGTGATTGCACGAACTGATGGGACAAGAATGTCCATAGCCTCATTCTACAACCCTGCCAACGATGCCGTCATCTACCCTGCCCCAACATTGTTGGACACATCAAAGGAAGAGGAGACAGAGCAATTAGGAGTGAGTAGTTACCCGAAATTTGTGTTTGAGGATTACATGAGGCTCTATGCTACCCTCAAGTTCCAAGCTAAGGAGCCAAGATTTCAAGCCATGAAGGCAGTCGACTCTTTTTAGCTTAATTACTTCCCATTACTACAACAGCTTAATATCAGGTGCTGCTGCTTCTACTCTCTACTGCTGGAAGAACTTTTACTGATTCAGAAAAAAAGTGAACAAAAGAACATGCAATTAAGCTAGTGAATAACGATATGTCGATATGCATTTTTTAATTATCCAATTTCTTCTTACAGTTGTTGATTTGGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00249	220404	222141	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05933	E1.14.17.4	EC:1.14.17.4	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000249s00015887.1	PF14226.1	DIOX_N	5	97	6.00E-19
Glyur000249s00015887.1	PF03171.15	2OG-FeII_Oxy	158	254	7.80E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.161
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.355
SRR1811619	moderate drought stress	0.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.357
DRR006520	Root Summer glycyrrhizin high producing strain	37.065
DRR006521	Root Winter glycyrrhizin high producing strain	1.358
DRR006522	Root Winter glycyrrhizin high producing strain	1.063
DRR006523	Root Summer glycyrrhizin low producing strain	87.079
DRR006524	Root Summer glycyrrhizin low producing strain	85.643
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.433

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.746
SRR2868004	Drought Stress (root)	27.348
SRR2967015	Control (root)	7.606

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.336
SRR9715740	Leaf	6.838
SRR9715741	Leaf	47.363
SRR9715739	Root	15.297
SRR9715742	Root	184.007
SRR9715743	Root	151.809

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.303
SRR8749028	MeJA induced 9h	0.448
SRR8749029	MeJA induced 9h	0.337
SRR8749030	Uninduced	42.709
SRR8749031	Uninduced	27.975
SRR8749032	Uninduced	28.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.227
SRR8400027	Control - Root	15.080